Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24 122 1e-21 seq3 104 3e-16 seq9 86.0 9e-11 >seq24 Length=2561919 Score = 122 bits (134), Expect = 1e-21 Identities = 173/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 259942 CGGC-ACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGA 260000 |||| |||| ||| || ||| |||||| || || |||||| |||| | ||| | Sbjct 1153064 CGGCTACGCAGCGTCCCCAGCTTTCGTCCTGTTTCCTGTTGACCATGTCCGAAGATAGCA 1153123 Query 260001 TCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCA 260060 | ||||||||||| ||||| || ||||||||||| || || || ||| ||||||| |||| Sbjct 1153124 TTGAGGGCATCTACGACACACTGAAGCAGTGCGCCCTAATTTCAAAGTCGGCCGGTGGCA 1153183 Query 260061 TCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 |||| | || ||| | ||||| ||| | ||| | | ||||| ||||| Sbjct 1153184 TCGGACTGAACGTGCACTGTATCCGCGCGAAGGGAACGTACATCTCCGGCACGAACGGGA 1153243 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || ||||| || ||||| ||||| ||||| | ||| | ||||| || |||||||| | Sbjct 1153244 TTTCAAACGGTCTGGTGCCGATGCTACGCGTCTACAACAATACGGCACGGTACGTCGATC 1153303 Query 260181 AG 260182 || Sbjct 1153304 AG 1153305 >seq3 Length=6534354 Score = 104 bits (114), Expect = 3e-16 Identities = 186/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||| ||||| | || ||||| || || | |||| | ||| Sbjct 4991745 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 4991686 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| | |||||| ||| ||| ||||| |||||| ||||| || ||||| ||| || Sbjct 4991685 GGGAGACGCTGAAAC-CGAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTT-GC 4991628 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||| || |||||| |||||| |||| | ||||| | | ||||| || | Sbjct 4991627 CGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 4991568 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || || | || ||||| |||||||| || || ||||| | ||| || | Sbjct 4991567 TACGGAAGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGAT 4991508 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||||| ||||||||||| ||| || Sbjct 4991507 GTACTCGCTGCTGATCGACACGTACATC 4991480 >seq9 Length=3277154 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| ||||||| | | ||||| | || ||| ||||||| ||| | ||| Sbjct 2979421 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 2979480 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | || |||||||| || |||||||||||||||||||| || | ||||| ||| Sbjct 2979481 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTAATGATGATGTCCGGC 2979540 Query 1600640 GT 1600641 || Sbjct 2979541 GT 2979542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177615692124374