Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq118 123 2e-23 seq82 118 1e-21 seq80 113 4e-20 seq38 98.7 9e-16 >seq118 Length=660226 Score = 123 bits (136), Expect = 2e-23 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || ||||||||| || ||||| | |||||||| | ||||| || || || Sbjct 48957 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 49016 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || || |||||| | | |||| ||||| ||| ||| ||||| |||||||| || Sbjct 49017 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 49076 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||| | || |||||||||||||| |||||| |||| Sbjct 49077 AAA-ACGCCCGAGGAAGCGCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGA 49135 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || ||||||||||| || || |||||||| || ||| ||||||| || Sbjct 49136 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGTATCCACGATCA 49195 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGC 44399 |||| ||| |||| |||| |||||| | || ||||||||||| |||| ||| Sbjct 49196 GGGC-TGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATGC 49253 >seq82 Length=995134 Score = 118 bits (130), Expect = 1e-21 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||||||||| | | | |||| ||| | || |||||| || ||||| || Sbjct 831580 TTAATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATA 831521 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || | || ||| || | || ||||||||||| || || || |||| |||||||| || Sbjct 831520 GTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATC 831461 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | |||| | |||||||||| |||||| ||||| | | | | ||| || ||| Sbjct 831460 TGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATC---CGA 831404 Query 35683 T---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||||| |||||| || || || || | ||||||||| || |||||||| Sbjct 831403 TGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | || ||| || | || ||||||||||| || || || Sbjct 831082 CTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAA 831023 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | || | | |||||||||| |||||| ||||| | | Sbjct 831022 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 830963 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||| || |||| || ||||||| |||||| || || || |||| |||||| Sbjct 830962 CTCAATCGTATC---CGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTT 830906 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 830905 CACGAAAATCTGCAT 830891 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | || ||| || | || ||||||||||| || || || Sbjct 831310 CTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAA 831251 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | || | | |||||||||| |||||| ||||| | | Sbjct 831250 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 831191 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||| || |||| || ||||||| |||||| || || || |||| |||||| Sbjct 831190 CTCAATCGTATC---CGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTT 831134 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 831133 CACGAAAATCTGCAT 831119 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | || ||| || | || ||||||||||| || || || Sbjct 830854 CTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAA 830795 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | || | | |||||||||| |||||| ||||| | | Sbjct 830794 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 830735 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || | ||| ||||||| ||||| || || || |||| ||||||||| Sbjct 830734 CTCAATCGTATCCGATGGTTCGACCTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCAC 830675 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 830674 GAAAATCTGCAT 830663 >seq80 Length=1009533 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| ||| | || ||||| ||||||||||| ||| Sbjct 729656 TTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG 729597 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | || || | || ||||||||||| || || || |||| |||||||| || | Sbjct 729596 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 729537 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| || ||||||||| ||||||| ||||| | | | | |||||| | || Sbjct 729536 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 729477 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | |||||||| || |||||||| Sbjct 729476 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 729427 >seq38 Length=1813042 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | || |||||| || |||||||| |||| | Sbjct 65546 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 65605 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | || Sbjct 65606 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 65665 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 65666 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 65725 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || |||||||| | ||||| || || |||||||| Sbjct 65726 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782178017160