Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq24 242 3e-59 seq82 91.5 1e-13 >seq24 Length=2561919 Score = 242 bits (268), Expect = 3e-59 Identities = 1030/1607 (64%), Gaps = 39/1607 (2%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || || || ||||| |||||||||||| |||| ||| |||||||| Sbjct 1154702 TTGTCCACCGTAAACTGGATCGCATTCACGGCCGGCTTGGTACGCAGATAGTACATGCCA 1154643 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAATTGG 130523 ||||| | || || || || || ||||| || | ||| || || | Sbjct 1154642 GTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCA--GCTTGCCATAGTTTG 1154585 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | ||| ||| ||||||| ||||||||| ||||| ||||| || || | ||||| | Sbjct 1154584 GCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCACCACGATCTGCGG 1154525 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || ||| | ||||| |||||||| | || ||||| || || | ||| Sbjct 1154524 CCATTTTGATGCACG-TTTTAACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAATT 1154466 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | ||||| ||||||| ||| | || | || ||||||| | ||||||||| Sbjct 1154465 TCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCTT 1154407 Query 130702 CATACTTTTATCGTACA-ATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 ||| ||| ||| | ||| | || ||| ||| | | | ||||| || | | Sbjct 1154406 CATGTCGAGATCCCACAGACCCATGTTGGTCAA-ATCCTGCAGAAGATGATGGTTCACCA 1154348 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 || || || || | || ||||| ||| ||||| ||| |||| |||| || || | Sbjct 1154347 CCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACG 1154288 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 |||| |||||||||| |||||||| || | || || ||||| |||| | || | Sbjct 1154287 ATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCCAACAGCAGCG 1154228 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 |||| |||| ||||||| | | ||| ||| |||||| || |||| | ||| ||| | Sbjct 1154227 AATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCG 1154168 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATT 131000 | |||| | ||||||||||| || | || || ||||| || || | || ||| | Sbjct 1154167 TCGGTT---CCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGGCTGCCCT 1154111 Query 131001 CGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGT 131060 || ||| ||||| || || | |||| || ||| ||||||| || |||| Sbjct 1154110 CGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGT 1154051 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 | || ||||||||| ||||| | ||||| | || || | | ||| ||||| ||| Sbjct 1154050 AGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGAT 1153991 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTT 131180 | ||||| || || || || || | ||||| | || | || | ||| || || Sbjct 1153990 AGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGC 1153931 Query 131181 TTAAATTACATTTACGC-GAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGT 131237 | ||| | ||| | | | ||| |||||| || | ||||| ||||||| Sbjct 1153930 GCATATTGGA---GCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGT 1153874 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||||||| ||| | | | ||| |||| || | || ||| |||| Sbjct 1153873 TCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT---TT 1153817 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 | || | |||||||| || | || || |||||||| || || || || | Sbjct 1153816 TATCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCAT 1153757 Query 131358 CATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 | | ||| | |||| |||||||| | |||||| || | || |||||||| | Sbjct 1153756 CCT--TCGACGAGTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGAT 1153699 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 ||| || || || |||||| ||| | |||||||||| |||||| || ||| || Sbjct 1153698 ATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGT 1153639 Query 131476 TTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATTTG 131533 ||| || || | ||| || | | | || | || | | || || || | Sbjct 1153638 TTCCACCTGCGATTCGATGA--TCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATA 1153581 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 | | || ||| ||||| | ||||| | | || || | || ||| | | || Sbjct 1153580 AAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCC---CCAGGTG 1153524 Query 131594 TCC---AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 ||| | | |||||| ||| || ||||| || ||||| ||||| || || Sbjct 1153523 TCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACA 1153464 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 |||||||| |||| ||||| | ||| | ||||| |||| || | || ||| Sbjct 1153463 CGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCC 1153404 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || | |||| |||| || | ||| || || || || |||||||||| || Sbjct 1153403 TCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCAGGGCTCG 1153344 Query 131771 AAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATG 131827 | ||| | || | ||| || ||| || || || |||| || | || || | Sbjct 1153343 AGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTA 1153284 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 |||||||| ||||| | ||| ||| ||| |||||| | | || || |||| ||| Sbjct 1153283 TTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGAGATG 1153224 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947 || | || || || | ||| ||| ||||| ||||| || || ||| | | || || Sbjct 1153223 TACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAA 1153164 Query 131948 ATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 ||||| ||||| | | || |||| ||||| || || | ||| || Sbjct 1153163 ATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCTATC 1153117 >seq82 Length=995134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 831345 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 831286 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | || |||||||| ||||| ||||| Sbjct 831285 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 831226 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | || || | ||||| |||| Sbjct 831225 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCT-CAAC 831167 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||||||||||||| || || |||||| Sbjct 831166 CTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 831118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 27013 AATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || || || |||| || | |||| ||| | || || || || || || || Sbjct 831582 AATTAATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTA 831523 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| || | |||| | || || ||||| || |||||| | || |||||||| ||| Sbjct 831522 TAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGA 831463 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-T 27190 || ||||| | ||||| || || |||||| |||| | || | || || | | Sbjct 831462 TCTGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGAT 831403 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| |||| || || || || | || || || ||||||||||| || || |||||| Sbjct 831402 GGCT-CAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCATA 831346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 830889 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 830830 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | || |||||||| ||||| ||||| Sbjct 830829 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 830770 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | || | || || | | ||| || Sbjct 830769 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACC 830710 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||||||||||||| || || |||||| Sbjct 830709 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 830662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 831117 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 831058 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || |||||||| ||||| ||||| Sbjct 831057 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 830998 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | || || | ||||| |||| Sbjct 830997 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCT-CAAC 830939 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||||||||||||| || || |||||| Sbjct 830938 CTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 830890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923902394024