Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24 131 2e-25 >seq24 Length=2561919 Score = 131 bits (144), Expect = 2e-25 Identities = 639/1000 (64%), Gaps = 25/1000 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| || || || ||||||| || || | |||||||| ||||| Sbjct 1154316 GTAAACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGA 1154257 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || |||||||| |||| || || || |||| ||| | || ||| ||| Sbjct 1154256 AGCCGTCGGCATTGGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTC 1154197 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||| | | |||||| | || | | | |||| | |||| |||| || |||| Sbjct 1154196 CTTCAACTCGGCCCAGTTCCACAGATCCG-TCGGTTCCTTGTTCC-ACATCTCGTACTGC 1154139 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | | | | || ||||| | || || || | || | | ||| Sbjct 1154138 AGAATGCCCTTGCTCACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCC 1154079 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 || ||||||||||| ||||| | ||| || |||||||| || || | ||| | | Sbjct 1154078 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGC 1154019 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | | || || || || | | ||||| | || || |||| || | || Sbjct 1154018 TTTTGAGCCTCTTCGCTTTCGTACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCC 1153959 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACG 111121 || || || | || || || ||||| |||||||| || ||| || ||| ||| Sbjct 1153958 TGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAG---CGCTTAGCCTCCGGCACG 1153902 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 ||||| |||| ||||||| | ||| ||||| || || |||| | || ||| Sbjct 1153901 GGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCC 1153842 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | || ||| || | ||| | || | |||| || ||| || | | |||||| Sbjct 1153841 TTCAGCTTTGCAAAGTCATACGTTTTA---TCTTGCTTTACAAACATGTTCAAGGCGATC 1153785 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||| |||||| || || ||||||||| | |||||| | |||||| || || Sbjct 1153784 GAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATTTCAGTGCAC 1153725 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 |||||||||| || || || || | ||||| |||||||| || ||||| |||||| Sbjct 1153724 AAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCC 1153665 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||||| |||||||| || || || ||| ||| |||| || || || ||| | | Sbjct 1153664 TTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGA 1153605 Query 111422 T-CGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | | ||| || | || || | || ||||| |||||||| ||||| || Sbjct 1153604 TCCTGCGCCT--TCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCT 1153547 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 || ||||| || ||| | ||| || ||||| || | || || || | || Sbjct 1153546 TCTCGAACTCTTCGCCCCAGGTGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGC 1153487 Query 111540 ACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 111597 ||| | | || |||| || ||||||||||| ||||| || |||||||| | | Sbjct 1153486 TCCA--CATTTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTA 1153429 Query 111598 AAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAAC 111655 ||| | || | | | | || |||| || | || ||| || | | || || ||| Sbjct 1153428 AAACATGTCCCGTGCGCGGA-CCTCCTCCTTGCCAGTGTT-TTTCTTCAGATCGAGAAAC 1153371 Query 111656 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 || | ||||| | ||||| ||||| ||||||| |||| Sbjct 1153370 TCGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGA 1153331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016087239200