Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24 95.1 1e-14 seq6 95.1 1e-14 >seq24 Length=2561919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 782/1249 (63%), Gaps = 37/1249 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || || || | |||| ||||||| | || | ||| || || | | Sbjct 1154660 CGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTC 1154601 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAG---GTTCATACTTTGGGATTGATCGATG 117953 | |||| | |||| ||| || | | ||| | ||| || |||||||| Sbjct 1154600 AGCTTGCCATAGTTTGGC---TCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATA 1154544 Query 117954 AAGCGTCCCCGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAGT 118012 || || ||||| || ||||| | || ||| | || | | ||| ||||| || || Sbjct 1154543 AACGCACCACGATCTGCGGCCATTTTGATGCACGTT-TTAACCGAGATCTCCCATACCGT 1154485 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 |||| |||| ||| || | || ||| || | || |||||||| |||||| Sbjct 1154484 TTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTG-- 1154427 Query 118073 CTTGACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 ||| || | || |||||| || ||| ||||| || || | | ||||| Sbjct 1154426 -TTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTG 1154368 Query 118130 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 118189 || ||||| | || || || ||||| |||| | ||| || || | || Sbjct 1154367 CAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTT 1154308 Query 118190 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 118249 | |||||| ||||| || | |||||||| || | ||||| || ||||| || || || Sbjct 1154307 CGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGG 1154248 Query 118250 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGA 118307 ||| || |||| || || || || | ||| | ||| | || |||||| | Sbjct 1154247 CATTGGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCG--ATCTTTTCCTTCAAC 1154190 Query 118308 GCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 118365 || |||||| | || | | | | ||| | |||||| || |||| || || | Sbjct 1154189 TCGGCCCAGTTCCACAGATCCG--TCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGC 1154132 Query 118366 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 118425 | | | | | || ||||| | ||||| || ||||| || | ||||| || Sbjct 1154131 CCTTGCTCACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCAC 1154072 Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 ||||||| || || || ||| || || ||||| || || | ||| | || || | Sbjct 1154071 AGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTA--GCTTTTG 1154014 Query 118486 --CCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGA 118542 |||| ||| || ||| || ||| | || || |||| || | || || | Sbjct 1154013 AGCCTCTTCGCTTTCGTACG-GATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCA 1153955 Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAA 118602 | |||| || || || | || | |||||| || | ||| | ||||||||| Sbjct 1153954 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1153895 Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 |||| ||| || | | || ||||| || || ||| | || ||| | |||| Sbjct 1153894 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCT 1153835 Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 || | | ||| | | | |||| || ||| || | | |||||| || |||| Sbjct 1153834 TTGCAAAGTCATACGTTTTA---TCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCA 1153778 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 |||| || || | ||||||||| | |||||| | |||||| ||||||||||| | Sbjct 1153777 GATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATTTCAGTGCACAAGTTGG 1153718 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTTGTA 118840 ||| || |||||||| | |||| || || ||||| || || ||||||||||| Sbjct 1153717 AACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATCCTTGTA 1153660 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900 |||||||| || || || ||| || || | || || || ||| | ||| Sbjct 1153659 CAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTG 1153600 Query 118901 AGCTGGCACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAA 118959 || ||| || || | || ||||||| |||||||| ||||| || || | Sbjct 1153599 CGCCTTCAC-CTGCCGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGA 1153541 Query 118960 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 ||||||| ||| || || || || || || | | ||||| | || ||| Sbjct 1153540 ACTCTTCGCCCCAGGTGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACA 1153481 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 | | |||| || ||||||||||| ||||| || ||||| || || Sbjct 1153480 TTTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGC 1153432 >seq6 Length=3884767 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||| | | ||| || ||||||||| | || ||||| || || || Sbjct 3637986 GTGAAGATGTACCTGGGGCTGG-CGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 3638044 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || | || |||||||| ||||| || | ||||| | |||| |||| Sbjct 3638045 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 3638104 Query 179157 AATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGC 179216 ||||| ||| || | || ||||||||||| ||||| || ||||| || | | Sbjct 3638105 GATCGTCGAGCAGAGCGACATCTCGCCGTGATGGTAGGCCGATTTTTCCGCGACCGAACC 3638164 Query 179217 CGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCAC 179276 |||| ||| |||||||||| ||| |||| || | |||||||| |||| ||| Sbjct 3638165 GGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTCACGCTTGAAGCACGTGTACAGCAC 3638224 Query 179277 CTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 ||| | || ||||| | ||||| |||| || ||||| ||| Sbjct 3638225 CTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGC 3638273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419530398120