Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 237 2e-57 seq6 152 6e-32 seq3 140 4e-28 >seq24 Length=2561919 Score = 237 bits (262), Expect = 2e-57 Identities = 477/701 (68%), Gaps = 6/701 (1%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 || ||||| |||||| ||||||| |||| || | |||| | | || ||| | ||| Sbjct 1153030 TATTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCTACGCAGCGTCCCCAGCTTTCG 1153089 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||| |||||| || | ||| || || || || ||||||||||| || || ||| Sbjct 1153090 TCCTGTTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACACTGAAG 1153149 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 |||| |||| || || |||| | | ||||| ||||| | || ||| | | | ||| Sbjct 1153150 CAGTGCGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACGTGCACTGTA--TCC 1153207 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| || |||||||| | | | || | ||||| |||| Sbjct 1153208 GCGCGAAGGGAACGTACATCTCCGGCACGAACGGGATTTCAAACGGTCTGGTGCCGATGC 1153267 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||||| |||||| ||||| ||||||||| | |||||||| ||||| || Sbjct 1153268 TACGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAG 1153327 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||||||||| |||||||| ||||| | ||| || | ||||||||||| ||| Sbjct 1153328 CATTCGCCATCTATCTCGAGCCCTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGA 1153387 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| | ||| || ||| ||||| || |||||||| |||| Sbjct 1153388 AAAACACTGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTGTGGATACCGG 1153447 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| | |||||| | |||| |||| ||||||||||||| |||| | Sbjct 1153448 ACCTGTTCATGAAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCGCACGATT 1153507 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTA-TCGGACGTACGCA 53806 | ||||| || || || || || ||||| | || |||| |||| ||||| Sbjct 1153508 GTCCCGGTCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGA-GTACGAG 1153566 Query 53807 GTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAG 53866 |||| |||| | | | |||| ||||||| || | ||| ||| ||| || | Sbjct 1153567 AAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAA 1153626 Query 53867 AGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGC 53926 |||||||| || || ||||||||| ||||||||| | ||| || || Sbjct 1153627 TCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGT 1153686 Query 53927 AACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||||| |||| |||||| |||||||| |||||| || Sbjct 1153687 AACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTG 1153727 >seq6 Length=3884767 Score = 152 bits (168), Expect = 6e-32 Identities = 290/421 (69%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||| | | || |||||||||||||| ||||| Sbjct 3638720 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTC 3638779 Query 152802 AAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA--CGT 152850 ||||| |||||||||||||||| | || |||| |||| |||||| | | Sbjct 3638780 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCTTCAGGTCGTCCAT 3638839 Query 152851 AGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATT 152908 |||| ||| ||| | ||| || || ||||||||||| | || ||| || || Sbjct 3638840 CGTGAG--GTACTTCTT--CTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTT 3638895 Query 152909 CCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGA 152968 || |||| || | ||| || ||| || || || || || || |||| || || | Sbjct 3638896 CCGCATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCA 3638955 Query 152969 GTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTT 153028 | |||||||||||| | | || ||| || || || | ||| || | | || || | || Sbjct 3638956 GCGGAAACACGCCGTATGTGTCGCGCCCGACCACCCCCAGCCCCGACACGGCGAGCGTTT 3639015 Query 153029 TCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCC 153088 | |||||||| |||||||||| || ||||| |||| | | || | | ||||| Sbjct 3639016 TGGCCGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCGCGAGCCGGCAT 3639075 Query 153089 AGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTT 153148 ||| ||||| || ||||| ||||| ||| ||||| | ||||| |||||| |||| Sbjct 3639076 CGTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCCGGACGTTT 3639135 Query 153149 T 153149 | Sbjct 3639136 T 3639136 Score = 134 bits (148), Expect = 2e-26 Identities = 281/411 (68%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || ||||||||||| || || |||||| Sbjct 3638721 AGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTCC 3638780 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||||||||||| ||||||||| | ||| ||||| || Sbjct 3638781 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCT-TCAGGTCGTCCAT 3638839 Query 118094 --TAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 | | || | | ||| || || ||||||||||| | || ||| || |||| | Sbjct 3638840 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTTCCGC 3638899 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || || || || || ||||| || ||||||| ||||| || Sbjct 3638900 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 3638959 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| | |||| || || || || | || || | | || || | || || Sbjct 3638960 AAACACGCCGTATGTGTCGCGCCCGACCACCCCCAGCCCCGACACGGCGAGCGTTTTGGC 3639019 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | || || ||||| | | | | |||| ||| ||||| Sbjct 3639020 CGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCG-CGAG--CCGGCATC 3639076 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| | || |||||| || || || Sbjct 3639077 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCC 3639127 Score = 129 bits (142), Expect = 6e-25 Identities = 305/459 (66%), Gaps = 14/459 (3%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 ||||||| ||||| || || || ||||||| ||| | |||||| | || || ||| Sbjct 3637831 ATCCGGTGCCGATACCGTCCGCCCCGTTGATCAGCAGCATCGGAATGATCGGCAAGTACC 3637890 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | ||||||| | | ||| || || | ||| | | | | || ||| || Sbjct 3637891 AAACCGGCTCGATGCGCTGATTATCCTCGTACTGGTACTCGAGCAGCGGATCGTCGAGCG 3637950 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| ||| || | || |||| | | || |||||||||||| | || |||||| Sbjct 3637951 GATGGAAGATGTGCCGCGTCAGCGCAGACAGCATCGTGAAGATGTACCTGGGGCTGGCGC 3638010 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||||||| | ||||||||| || ||||| || || | || || |||| || Sbjct 3638011 TGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGATGT 3638070 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGA--CTCGCTTC 152171 ||||| ||| ||| | ||||| |||| || | ||||| | ||||| | || Sbjct 3638071 TGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGT--CGAGCAGAGCGACATCTC 3638128 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||| || || |||| | ||||||| | || |||| ||| |||||||||| || Sbjct 3638129 GCCGTGATGGTAGGCCGATTTTTCCGCGACCGAACCGGCCAGCTGGGCCACCTTCACCTC 3638188 Query 152232 -----CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTC 152286 ||||||| | ||||| || | ||| | ||||||||||||| || ||| Sbjct 3638189 GCGCTTGTCGTCACG-----CTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTC 3638243 Query 152287 AAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || ||||||| || | ||||| || ||| | ||||| Sbjct 3638244 AACCCGTCCAGCATGCACGGAATGGAGCGCACGTTGTCC 3638282 Score = 116 bits (128), Expect = 4e-21 Identities = 284/427 (67%), Gaps = 14/427 (3%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || |||||||| || || || || ||||| | |||||| | || || | ||| | Sbjct 3637833 CCGGTGCCGATACCGTCCGCCCCGTTGATCAGCAGCATCGGAATGATCGGCAAGTACCAA 3637892 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGAC--GTACTTGAGCACCGCATTGTCACTCG 117269 | ||||| | || || || || || || ||||| ||||| || || ||| || Sbjct 3637893 ACCGGCTCGATGCGCTGATTATCCTC-GT-ACTGGTACTCGAGCAGCGGATCGTCGAGCG 3637950 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||| ||| |||| | ||| || | || ||||| ||||| | | ||| || Sbjct 3637951 GATGGAAGATGTGCCGCGTCAGCGCAGACAGCATCGTGAAGATGTACCTGGGGCTGGCGC 3638010 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 ||||||||||| | || ||||||||||| || || | ||| | || || || | || Sbjct 3638011 TGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGATGT 3638070 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 ||||| ||| || |||| || |||| ||||| ||||| ||| | ||| | Sbjct 3638071 TGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTCGAGCAGAGCGACATCTCGC 3638130 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC-- 117507 | || || || |||| | ||||| || | || |||||||| |||||||||| || Sbjct 3638131 CGTGATGGTAGGCCGATTTTTCCGCGACCGAACCGGCCAGCTGGGCCACCTTCACCTCGC 3638190 Query 117508 ---TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 || ||||| | ||||| ||| | || | |||||||||||| | ||||||| Sbjct 3638191 GCTTGTCGTCACG-----CTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTCAA 3638245 Query 117565 ACCATCC 117571 || ||| Sbjct 3638246 CCCGTCC 3638252 >seq3 Length=6534354 Score = 140 bits (154), Expect = 4e-28 Identities = 257/372 (69%), Gaps = 11/372 (3%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||| | |||||| || | |||||| || ||||| | |||||||||||||| Sbjct 5694272 CGCCTGCTCCACAAACTCCCGCACCGAGTGCGTTTCGCCCGTTGCGATCACGAAATCTTC 5694331 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| |||||||| || | ||||| |||| ||||| ||||| Sbjct 5694332 CGGCCGCTCCTGCTGCATCATGAGCCACATCGCCTCTACGTAATCCTTCGCGTGGCCCCA 5694391 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||| ||||| | || || || || ||||| | || |||||| | || Sbjct 5694392 GTCACGCTTCGAGTCGAGATTGCCCAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTT 5694451 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 || || | | | || || ||||||||||| || | || || ||| ||||| Sbjct 5694452 GGCCACCGAGC---GGGTGATTTTGCGCGTCACGAAATTCTCCCCCCGGCGCGGCGACTC 5694508 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 ||| |||||||| ||||| | || || ||||| |||||| ||||| ||||| || Sbjct 5694509 GTGATTGAACAGGATGCCGTTGCAGGCGAACATATCGTACGCTTCGCGATAGTTGATCAC 5694568 Query 124775 CATCCAATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| ||||| | | ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 5694569 AATCCAGTACCCGTACATCTTGGCACACG-CGTACGGCGAGCGGGGATAGAACGGGGTCT 5694627 Query 124834 TTTCATTTTGGG 124845 |||| || |||| Sbjct 5694628 TTTCGTTCTGGG 5694639 Score = 113 bits (124), Expect = 5e-20 Identities = 230/332 (69%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || || || ||||| || || || || | ||| || | ||||||||| Sbjct 5694299 GTGCGTTTCGCCCGTTGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATGAGCCA 5694358 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||| |||||||||| |||||| |||||||| ||||| | || | || || || Sbjct 5694359 CATCGCCTCTACGTAATCCTTCGCGTGGCCCCAGTCACGCTTCGAGTCGAGATTGCCCAG 5694418 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA--CTCAGCCAGACCGAGC--GTGATCTTGCGC 159132 ||| | | ||| | | | | | || ||| ||||||| ||||| |||||| Sbjct 5694419 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCC--ACCGAGCGGGTGATTTTGCGC 5694476 Query 159133 GTCAC-AAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGC 159191 ||||| ||| ||| | || || || |||||| || || ||||| |||||| | || || Sbjct 5694477 GTCACGAAATTCT-CCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGC 5694535 Query 159192 GAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG-AGA 159250 ||||| | || | ||||| || || | |||||||| || | | ||||| | | Sbjct 5694536 GAACATATCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACA 5694595 Query 159251 CGCCGTATGGACTCCGAGGATAAAATGGTGTC 159282 || |||| || || ||||| || || ||| Sbjct 5694596 CG-CGTACGGCGAGCGGGGATAGAACGGGGTC 5694626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202134914600