Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq82 107 1e-18 seq80 82.4 5e-11 >seq82 Length=995134 Score = 107 bits (118), Expect = 1e-18 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| |||||| |||||| || |||||||| || || || || || Sbjct 831564 AGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 831505 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || ||||| | ||||||| Sbjct 831504 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCC 831445 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || || | ||| || || || | ||| || |||| Sbjct 831444 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGTATC--CGATGGCTCAACCTCCAGC 831388 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||||| |||||||| ||||||||||| Sbjct 831387 GTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 104 bits (114), Expect = 1e-17 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| |||||| |||||| || |||||||| || || || || || Sbjct 830880 AGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 830821 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || ||||| | ||||||| Sbjct 830820 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 830761 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTC--TCCACTTCCACG 34665 ||||| |||||| | || || | ||| || || || | || || |||| | Sbjct 830760 TTGTCCTGGATCTTC-GCCTTCACATTCTCAATCGTATC--CGATGGTTCGACCTCCAGG 830704 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || ||||| | |||||||| ||||||||||| || Sbjct 830703 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATT 830660 Score = 102 bits (112), Expect = 5e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| |||||| |||||| || |||||||| || || || || || Sbjct 831336 AGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 831277 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || ||||| | ||||||| Sbjct 831276 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 831217 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || || | ||| || || || | ||| || |||| Sbjct 831216 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGTATC--CGATGGCTCAACCTCCAGC 831160 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | |||||||| ||||||||||| Sbjct 831159 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || ||| |||||| || |||||||| || || || || || Sbjct 831108 AGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 831049 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || ||||| | ||||||| Sbjct 831048 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 830989 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || || | ||| || || || | ||| || |||| Sbjct 830988 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGTATC--CGATGGCTCAACCTCCAGC 830932 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | |||||||| ||||||||||| Sbjct 830931 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 >seq80 Length=1009533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| || || ||||| |||||||| || || || || || || Sbjct 729644 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 729585 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || || || | || ||| Sbjct 729584 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 729525 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||| | || || | || ||||| ||| || || | || Sbjct 729524 TTGTCCTGGATCTTT-GCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGT 729466 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| | |||||||| |||||||||||||| Sbjct 729465 GATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 729424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721824900291