Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq118 185 8e-42 seq80 150 2e-31 seq82 127 2e-24 seq38 125 6e-24 >seq118 Length=660226 Score = 185 bits (204), Expect = 8e-42 Identities = 228/312 (73%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||||||| |||||||| |||| || | |||| | | || ||||| |||||| Sbjct 48972 ACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAC 49031 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || || |||||||||| ||||| |||||||| |||| ||| | | |||| | || Sbjct 49032 GGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACGAAAACGCCCGAGGAA 49091 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| | || || | | | || ||| ||||||| | ||||| |||||| | || Sbjct 49092 GCGCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCGAAC 49151 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| ||||| |||||||| || ||| | |||||||| || |||||||||||| Sbjct 49152 GGGTACGTCGGTTGCATGTGGTCGATCGCGGGTATCCACGATCAGGGCTGGAAGGAGCGC 49211 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 || | |||||||| ||||| || |||||||||||||| || | | ||||| || || Sbjct 49212 GAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATGCAAGCGTAAATTCAACGTG 49271 Query 135761 AATTTGTACGTG 135772 ||| || |||| Sbjct 49272 AATGCGTTCGTG 49283 >seq80 Length=1009533 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 729426 CATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 729485 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || ||| || || ||||| |||||||| || || ||||| Sbjct 729486 GGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 729545 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || || | ||||| ||||| Sbjct 729546 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAA 729605 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| |||||| | ||| |||| |||| | || ||||| Sbjct 729606 CATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGG 729653 >seq82 Length=995134 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || || || ||||| || Sbjct 830663 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAGGTCGAACCATCG 830722 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 830723 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 830782 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | ||| | || || || ||| Sbjct 830783 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 830842 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| ||||| | ||| |||| ||||| || Sbjct 830843 ATCCAGAAGGAGTCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGTAT 830892 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || || || || || || Sbjct 830891 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 830950 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 830951 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 831010 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||| || | ||| | || || || ||| Sbjct 831011 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 831070 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| ||||| | ||| |||| ||||| || Sbjct 831071 ATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTAT 831120 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || || || || || || Sbjct 831119 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 831178 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 831179 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 831238 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | ||| | || || || ||| Sbjct 831239 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 831298 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| ||||| | ||| |||| ||||| || Sbjct 831299 ATCCAGAAGGAGTCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGTAT 831348 >seq38 Length=1813042 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 65772 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 65713 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 65712 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 65653 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 65652 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 65593 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| |||| |||| ||||| Sbjct 65592 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 65546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907380255040