Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq80 107 1e-18 seq38 104 2e-17 seq82 100 2e-16 >seq80 Length=1009533 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| ||||| || || || ||||| || || || || | Sbjct 729424 AACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 729483 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | ||| || ||||| ||||| | || ||||| Sbjct 729484 TCGGACACGATCGAGAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 729542 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | |||||| | ||| || Sbjct 729543 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 729602 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 729603 CAACATTCAGAAGGAATCGAC 729623 >seq38 Length=1813042 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 65775 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 65716 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || | | ||||| || || | |||||||| Sbjct 65715 TCGGATACGATCGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGA 65657 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | ||||| | ||| || Sbjct 65656 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTA 65597 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 65596 CAACATCCAGAAGGAGTCGAC 65576 >seq82 Length=995134 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || ||||| || ||||| || || ||||| | || Sbjct 831347 ATGCAGATTTTCGTGAAAACTCTAACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 831406 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | ||||||||||| Sbjct 831407 GATACGATTGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATTCCGCCAGATCA 831465 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || ||||| || | ||||| | || || || Sbjct 831466 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 831525 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | ||| | ||| | | |||| || ||| Sbjct 831526 CATCCAGAAGGAGTCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGA 831574 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || ||||| || ||||| || || ||||| | || Sbjct 831119 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 831178 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | ||||||||||| Sbjct 831179 GATACGATTGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 831237 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || ||||| || | ||||| | || || || Sbjct 831238 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 831297 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 831298 CATCCAGAAGGAGTCCACTCTTCATCTGGTT 831328 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| || || ||||| || ||||| || || || || | Sbjct 830660 AATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAGGTCGAACCA 830719 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || |||| ||| | || | || | | ||||| || || | |||||||| Sbjct 830720 TCGGATACGATTGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGA 830778 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || ||||| || | ||||| | || || Sbjct 830779 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTA 830838 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || |||||||| | ||| | ||| Sbjct 830839 TAACATCCAGAAGGAGTCCACTCTTCATCTGGTT 830872 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || ||||| || ||||| || || ||||| | || Sbjct 830891 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 830950 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | ||||||||||| Sbjct 830951 GATACGATTGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 831009 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || ||||| || | ||||| | || || || Sbjct 831010 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 831069 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 831070 CATCCAGAAGGAGTCCACCCTTCATCTGGTT 831100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001249789716