Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq112 241 1e-58 seq646 136 4e-27 seq1 118 1e-21 >seq112 Length=21277816 Score = 241 bits (266), Expect = 1e-58 Identities = 316/438 (72%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| || ||| |||||||||| || ||||||| || ||||| ||| |||| Sbjct 19493549 TTCAATGCCATTGAAACGTTGCCGTGCGTGAAGAAGAAGGCAGACTGGGCACTGAACTGG 19493490 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 ||| | ||| |||| ||| ||||| || | || || || ||||| ||||| || Sbjct 19493489 ATCTCGAGCAAGAAGGCAAACTTTGGCGAACGTGTCGTAGCGTTTGCGGCTGTCGAAGGA 19493430 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || || || |||||||| || ||||| ||||| || ||||| ||||| Sbjct 19493429 ATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTAAAGAAGCGAGGCCTTATGCCG 19493370 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || ||||| ||| |||||||| || || | ||||| || ||||| || ||||||||| Sbjct 19493369 GGACTGACCTTCTCGAACGAGCTGATTTCACGCGACGAAGGACTGCACTGTGACTTTGCC 19493310 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTC 117247 || || |||||||| || |||||||| ||| | || ||| || | ||| ||| || Sbjct 19493309 TGCCTGATGTTCAAGTATCTGGTGCAGAAACCTTCCAAGGAGCGGGTGACGGACATCATC 19493250 Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307 || ||||| | |||||||| || | || | || |||||||| | |||| Sbjct 19493249 CGTGATGCGGTTGTGATCGAGCAAGAATTTTTGACGAAGGCCCTGCCGGTCGATATGCTC 19493190 Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 || | || |||||| ||||||||| ||||| |||||||| ||||| | ||||| | Sbjct 19493189 GGTATGAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCCGATCGTTTGCTGATG 19493130 Query 117368 GAGCTGGTCGGCGCCAAG 117385 ||| ||| | ||| |||| Sbjct 19493129 GAGTTGGGCTGCGACAAG 19493112 Score = 181 bits (200), Expect = 1e-40 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || |||||||| || ||||| || || |||||||||| || || | Sbjct 19493929 AGGCGGAAGCTTCCTTTTGGACCGTGGAAGAGGTCGATCTCTCCAAGGACATGAAGGATT 19493870 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | ||| || ||||||||| ||||||||| ||||| || ||| Sbjct 19493869 GGGAATCGCTGAAACCG-AGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTGCC 19493811 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||| || ||||| ||||| || ||||| ||||| ||| |||||||| ||||| Sbjct 19493810 GCATCCGATGGTATCGTTAACGAAAACCTGGTGGAGCGCTTCAGCCAGGAGGTACAGGTA 19493751 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||| ||||| ||||| || || ||||| || |||||| || ||| Sbjct 19493750 ACGGAGGCACGCTGCTTTTACGGGTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATG 19493691 Query 116894 TATTCGACCCTCATCGACACGTACGTGCG 116922 || || || |||||||||||||| || Sbjct 19493690 TACTCACTGCTAATCGACACGTACGTTCG 19493662 >seq646 Length=9740529 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| ||||| |||||||| | || ||||| | | Sbjct 9473118 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 9473177 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| || | || || || || |||||| |||| ||| Sbjct 9473178 GACACGATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCAG 9473237 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 9473238 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCGGACTACAAC 9473297 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||| | || || ||||| ||| |||| Sbjct 9473298 ATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCG 9473332 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| |||||||| ||| | || ||||| || Sbjct 6801897 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCC 6801956 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | || || ||||||||||| |||| Sbjct 6801957 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 6802016 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || |||||||| |||| ||||| || ||||||| Sbjct 6802017 CAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTAC 6802076 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||| ||||||||| | || || ||||| ||| | ||| || | || |||| Sbjct 6802077 AACATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGCG 6802128 >seq1 Length=31626230 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 27268429 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268488 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 27268489 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 27268547 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 27268548 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 27268607 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 27268608 CATCCAGAAGGAGTCGACCTTGCA 27268631 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 27268201 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268260 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 27268261 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 27268319 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| || | ||||| || ||||||||| Sbjct 27268320 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27268379 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 27268380 CATCCAGAAGGAGTCGACCTTGCA 27268403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214833517280