Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq113 188 6e-43 seq646 145 7e-30 seq1 129 5e-25 >seq113 Length=1764599 Score = 188 bits (208), Expect = 6e-43 Identities = 738/1147 (64%), Gaps = 50/1147 (4%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| || || |||| | || | | |||| || || ||||||||||| ||||||||||| Sbjct 1504303 GTCTACCGTGAACTGGATTGCATTAACGGCCGGCTTGGTGCGCAAATAGTACATGCCCGT 1504244 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAG---TAAGTGGG 132994 |||||| ||| ||| |||| || || || |||| || | | || | || Sbjct 1504243 CTTCAGTCCCATCTTCCAGCCGTAGAAATGGAT---CGACGTCAGCTTGCCATAGTTCGG 1504187 Query 132995 TTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054 ||||| || || || | |||||| |||||| || || | | || ||||| || Sbjct 1504186 CTCGGCCACGTGTATGTTGAACGATTGTGACTGATCGATAAATGCCCCGCGATCGGCAGC 1504127 Query 133055 CATGTTTATTATACACTTTGATTTG-----ATCTCCCATGCCGTCTTGAAGAGATTCTTG 133109 ||| |||| || ||| || ||| |||||||| |||| ||| |||| | | Sbjct 1504126 CAT-TTTA--ATGCACGTT--TTTACCGAAATCTCCCACACCGTTTTGTAGAGGTCGCGG 1504072 Query 133110 ACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTG 133169 | | ||| || || ||||||||||| | ||| || || | | |||||| ||||| Sbjct 1504071 ATCTCCTGCGGAATCGATTCAATGTTCTGAATGGAACCATTATTAGACAAAATGTTGTTC 1504012 Query 133170 CGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACC 133229 || || || | | | | | | | || ||| | |||| ||||| ||| Sbjct 1504011 TTCATATCGAGATCCCATAGGCCCATCGCAGTCAGATCTTGCAGTAGATGATGGTTCACC 1503952 Query 133230 ACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAA 133289 || || |||||||| | || || |||| || || ||||||||| |||| |||||| Sbjct 1503951 ACCTGGAACTCGCCCGATAGCACACGTCGATTGTAAACGTTCGACGTGTACGGCTCGAAA 1503892 Query 133290 GATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAA 133349 || || |||||||| | || |||||||||| || || ||||| |||| || | Sbjct 1503891 GACTCATTGTTGCCCAAAATTTGCGCCGTCGAAGCGGTCGGCATCGGGGCCAACAGTAGC 1503832 Query 133350 GAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATTG 133409 || || | | ||||| ||| || || | || || ||||| ||| |||| Sbjct 1503831 GAATTACGAATGCCGTGCTTTGCGATCTTCTCTTTCAGCTCAGCCCAGTTCCAAAGATCC 1503772 Query 133410 TTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTC 133469 | | | | | | | | || ||||| | ||||||| || ||||| Sbjct 1503771 GTCGGTTCCTT-----CTTCCACATC-TCGTATT---------GCAAAATGCCTTTGCTC 1503727 Query 133470 ACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCC 133529 |||||||| | | || | || || || || | | |||| |||||||||||| Sbjct 1503726 ACCGGACTTCCTGCATATGTCTCGTACGGACCTTCCCGTGCTGCCAACTCGCAGCTAGCT 1503667 Query 133530 TCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTG----GCATC 133585 |||| || || ||||||||| ||| ||| ||||| | || || || Sbjct 1503666 TCCAGCGCCCCATAGTAAATGGATTCAAATATTT----GTTGATTCAGCTTTTGTGCCTC 1503611 Query 133586 GTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGA 133644 ||||| ||||| | ||| || | | || || || ||||||| ||||| | |||| Sbjct 1503610 TTCGCTTTCGTATG-GATAGCGCATCAAAATGAATGCATCGGCCATGCCCTGCACACCGA 1503552 Query 133645 CGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGA 133704 |||||||| | ||| ||||| | || | || | ||||||| ||||| Sbjct 1503551 TACCGATGGGCCTATGGCGCATATTGGAGCGCTTTGCTTCCGGTACCGGATAGTAGTTGA 1503492 Query 133705 CGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACAT 133764 ||||||||| ||||| |||||||| | || || | | || |||||| || Sbjct 1503491 TGTCGATGATTTTGTTCAGATTGCGCGTAACGATCTTGGCGACATCCTTCAGCTTCGCAA 1503432 Query 133765 AGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTAC 133824 |||| ||||| || || | | ||| || |||| | ||||| ||| ||||| | Sbjct 1503431 AGTCGTATGTCCTG---TCAGCCTTTACGAACATGTTCAGTGCAATCGAGGCCAGATTGC 1503375 Query 133825 AAACGGCCGTCTCGT-TCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCAT 133883 |||| || |||| | | ||| || |||||| || || |||| ||| | |||| ||| Sbjct 1503374 AAACCGCAATCTCATCTTTCGACG-AATACTCCACAATTTCGGTGCACAAGTTGGAGCAC 1503316 Query 133884 TTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATG 133943 || ||||| || | || | ||| ||||| |||||| ||||||||| ||||| Sbjct 1503315 TTAATGGTTCCAACGTTCTGTTGGTTGCTTTTACGATTGCATGCATCCTTGTACAGCATA 1503256 Query 133944 TACGGCCCGCCGGTTTCGACGTTGGTCTCGACGATAAATCTAA--ACAAGTCTCTCGCCT 134001 ||||| |||| ||||| || | | || | ||| | || |||| ||| ||||| Sbjct 1503255 TACGGTACGCCCGTTTCCACCTGCGATTCAATGATCG--CGAACCACAAATCTTGCGCCT 1503198 Query 134002 TCACCTG 134008 ||||||| Sbjct 1503197 TCACCTG 1503191 >seq646 Length=9740529 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| |||| ||||| || || ||||||||||| || Sbjct 9473346 TACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCG 9473287 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| |||||| ||||| || || ||| ||||||||||||||||||| || | Sbjct 9473286 ACAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGG 9473227 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || || ||| || || | ||||| ||||||| ||||| Sbjct 9473226 GGATTCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGA 9473167 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 9473166 CCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 9473117 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || ||||| || ||||||||||| ||| || ||||| ||||| Sbjct 6802109 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 6802050 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| |||||||||||||| || || ||||||||||| || Sbjct 6802049 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 6801990 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || |||| | ||||||||| | ||| | ||||| Sbjct 6801989 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTTTT 6801930 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || |||||||| Sbjct 6801929 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 6801900 >seq1 Length=31626230 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| ||| || Sbjct 27268409 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27268350 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| |||||||||||||| ||||| |||||||||||||| Sbjct 27268349 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268290 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 27268289 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268230 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 27268229 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| || || Sbjct 27268637 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 27268578 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| |||||||||||||| ||||| |||||||||||||| Sbjct 27268577 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268518 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 27268517 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268458 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 27268457 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||| ||||| || |||||| |||||| ||||| || || Sbjct 15287634 GTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 15287575 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| ||| || ||| Sbjct 15287574 GCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTA 15287515 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| ||||| | ||| | ||| || || ||||| || Sbjct 15287514 ACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAGGGTC 15287455 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 15287454 TTGACGAAGATCTGCATG 15287437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826815205176