Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq168 105 8e-18 seq223 100 3e-16 seq135 100 3e-16 seq646 91.5 2e-13 >seq1 Length=31626230 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| || |||||| || || ||||| || | |||||| || |||| || Sbjct 27268637 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 27268578 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||||||||| ||||| || || |||||||| || | || | || |||||||||| | Sbjct 27268577 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268518 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | || | | |||||| || || || || | ||||||||| ||| Sbjct 27268517 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268458 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||||||| || ||||| ||||| Sbjct 27268457 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| ||||| || |||||| || || ||||| || | | Sbjct 27268427 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 27268368 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||||||||| ||||| || || |||||||| || | || Sbjct 27268367 AGAGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 27268308 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||||| ||| || || | || | | |||||| || || || Sbjct 27268307 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 27268248 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||| ||||| || |||||||| || ||||| ||||| Sbjct 27268247 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 100 bits (110), Expect = 3e-16 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 60053 TATGAAAA-ATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| |||| |||||| ||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 2549495 TATAAAAAGATTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 2549436 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 2549435 GGATACTGACCACTATACTATCGAGGA 2549409 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 19608525 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 19608466 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 19608465 TATACTATCGAGGA 19608452 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3716443 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3716502 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3716503 ATACTATCGAGGA 3716515 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 60059 AAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| | ||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 16337553 AAATTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 16337612 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 16337613 GACCACTATACTATCGAGGA 16337632 >seq168 Length=1444055 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 982992 AAAAAGTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 982933 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 982932 TGACCACTATACTATCGAGGA 982912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1173892 AAAAGATTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1173951 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 1173952 TGACCACTATACTATCGAGGA 1173972 >seq223 Length=17164539 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||||| |||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 7656044 AAGAATTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7656103 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 7656104 ACTGACCACTATACTATCGAGGAT 7656127 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||||| ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 7656350 AAAAGTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 7656291 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 7656290 CTGACCACTATACTATCGAGGA 7656269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 6739584 AATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTT 6739525 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 6739524 CCACTATACTATCGAGGA 6739507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 7655576 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 7655635 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 7655636 ATACTATCGAGGA 7655648 >seq135 Length=1606176 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 689936 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 689877 Query 60124 TATACTACCGAGGAT 60138 ||||||| ||||||| Sbjct 689876 TATACTATCGAGGAT 689862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 690559 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 690500 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 690499 ATACTATCGAGGAT 690486 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 689244 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 689185 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 689184 ATACTATCGAGGA 689172 >seq646 Length=9740529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | || |||||| ||||| ||||| || | ||| || || |||| || Sbjct 6802109 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 6802050 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||| || || || || |||||||| || | ||| | || |||||| ||| Sbjct 6802049 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 6801990 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | ||| || | || || || | || |||||||| Sbjct 6801989 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTTTT 6801930 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| || || || || ||||| ||||| || Sbjct 6801929 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 6801897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812753845840