Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq646 102 6e-17 >seq1 Length=31626230 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 27268637 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 27268578 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 27268577 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268518 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||||| || || |||||| Sbjct 27268517 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268458 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 27268457 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 27268409 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27268350 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 27268349 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268290 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||||| || || |||||| Sbjct 27268289 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268230 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 27268229 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||| || || ||| ||| | || ||||| || || || ||||| Sbjct 15287628 TCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCGAAG 15287569 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| || || || || | |||||||||||| ||| || |||||| | Sbjct 15287568 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTC 15287509 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | | || | ||||||||| | ||| |||||||| || ||||| ||||| || Sbjct 15287508 TCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAGGGTCTTGACG 15287449 Query 45326 AAGATTTGCATGTT 45339 ||||| |||||||| Sbjct 15287448 AAGATCTGCATGTT 15287435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 45155 ATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGC 45214 ||| |||| || | |||||| ||| | || ||||||||||| |||||||| |||| ||| Sbjct 15282870 ATGCTGTATTCCTGCAGTTGTCGACCATCTTCCAGTTGTTTGCCGGCGAAGATCATGCGC 15282929 Query 45215 TGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTG 45274 ||||| | ||||| | |||| || | || | || |||||| | | || | Sbjct 15282930 TGTTGATTTGGAGGAATTTCCTCGCGCTCATCGATCTGTTTCTTAACACTCTCAACCGTT 15282989 Query 45275 TCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 || | ||| ||||| | ||| |||||||| |||| ||||||| ||||| ||| Sbjct 15282990 GCCTCTGGCTCAGTGTCCACAGCAATGGTCTTGCCGGTCAACATCTTCACGAAGATCTGC 15283049 Query 45335 ATG 45337 ||| Sbjct 15283050 ATG 15283052 >seq646 Length=9740529 Score = 102 bits (112), Expect = 6e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| |||| |||| |||| ||||| || || ||||| || Sbjct 6802091 CTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAA 6802032 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| || || || || | |||||||| ||| || || ||| || Sbjct 6802031 GATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 6801972 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||| ||| ||||| | |||||| || || ||||| || || || || Sbjct 6801971 CTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTGAC 6801912 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 6801911 GAAGATCTGCATCTTG 6801896 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| ||| |||| | || ||||| || || |||||||| Sbjct 9473308 TCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 9473249 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || || || | || ||||| ||| || ||| ||| || Sbjct 9473248 ATGAGACGCTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 9473189 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||| ||||| | || || |||||||| || || || ||||| Sbjct 9473188 TCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACG 9473129 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 9473128 AAAATCTGCATG 9473117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071935444238