Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq646 95.1 1e-14 seq113 91.5 1e-13 seq112 84.2 2e-11 >seq1 Length=31626230 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || |||||||||||||| || |||| || || ||||| Sbjct 15287640 TGAAGGGTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCCAGCTGC 15287581 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| |||||||| || || || || || ||||| ||| | || Sbjct 15287580 TTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTC-CTGAATCTT 15287522 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | || | || |||| ||||||||||||| ||| | |||||| || || Sbjct 15287521 GGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGT 15287462 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || ||||| || ||||| Sbjct 15287461 CAGGGTCTTGACGAAGATCTGCAT 15287438 >seq646 Length=9740529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || |||||||| || || || |||| || || ||||| || || Sbjct 9473314 GTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCCTCCAGCTGCTTGCCG 9473255 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| |||||||| || || || ||||| || || ||| ||| || Sbjct 9473254 GCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTTGCCTTC 9473195 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | ||||| ||||||| || | ||||||||||| | |||| Sbjct 9473194 ACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTT 9473135 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9473134 TTCACGAAAATCTGCAT 9473118 >seq113 Length=1764599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 152754 GTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGAC 152813 || || |||||||||||||||||||| || || | ||||||||| | || | |||| Sbjct 1504266 GTGCGCAAATAGTACATGCCCGTCTTCAGTCCCATCTTCCAGCCGTAGAAATGGATCGAC 1504207 Query 152814 GCCATCTTAGCCAAAG-TAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAAT 152872 | || ||| |||| || | || ||||||| || | ||| |||||||| ||||| || Sbjct 1504206 GTCAGCTT-GCCATAGTTCGGCTCGGCCACGTGTATGTTGAACGATTGTGACTGATCGAT 1504148 Query 152873 AAATGCGCCTCTATCTGCTGCCAT 152896 |||||| || | ||| || ||||| Sbjct 1504147 AAATGCCCCGCGATCGGCAGCCAT 1504124 >seq112 Length=21277816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTT-CCGTGTGTGCGCAAAAAGGATGATTGGG 52579 ||| || || |||| || |||| || ||| ||||| ||| || |||| || |||| Sbjct 19493559 AGAGTTCCTATTCAATGCCATTGA-AACGTTGCCGTGCGTGAAGAAGAAGGCAGACTGGG 19493501 Query 52580 CATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTA 52639 || |||| |||||| | | | || || | |||| ||||||| | || |||||||| Sbjct 19493500 CACTGAACTGGATCTCGAGCAAGAAGGCAAACTTTGGCGAACGTGTCGTAGCGTTTGCGG 19493441 Query 52640 TAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGG 52699 || ||||| | || || ||||| ||||| || || || | | || | | Sbjct 19493440 CTGTCGAAGGAATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTAAAGAAGCGAG 19493381 Query 52700 GCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACA 52759 || | ||||| || || || || |||||| |||| || |||||||||||| ||||| Sbjct 19493380 GCCTTATGCCGGGACTGACCTTCTCGAACGAGCTGATTTCACGCGACGAAGGACTGCACT 19493321 Query 52760 CAGATTTTGCGTG 52772 || ||||| || Sbjct 19493320 GTGACTTTGCCTG 19493308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059795857600