Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq112 122 2e-22 >seq1 Length=31626230 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| |||||||| ||||| || || ||||| | || || Sbjct 15287650 AAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATC 15287591 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||| || || ||||| || || || Sbjct 15287590 CTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTC 15287531 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | ||||||| ||| || ||||| || || || || Sbjct 15287530 CTGAATCTTGGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGT 15287471 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| ||||| || || || || || |||||||| || Sbjct 15287470 CTTTCCAGTCAGGGTCTTGACGAAGATCTGCATGTT 15287435 >seq112 Length=21277816 Score = 122 bits (134), Expect = 2e-22 Identities = 229/332 (69%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||| || | ||| |||| ||||| || ||||| || |||||| | || |||| Sbjct 19215509 AAGAGCTGGAAACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGG 19215568 Query 238618 T--AAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGA 238675 | | || ||||||||||| | || | || ||||| ||||| || |||||||| || Sbjct 19215569 TGCAGGAG--GGCAAAATGCACGGCTTTCTGCGGATGTACTGGGCCAAGAAGATACTGGA 19215626 Query 238676 ATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACG 238734 ||||| | | | || | ||||| || || |||| || |||||||||||| ||| Sbjct 19215627 GTGGACAAAAACACCCGACGAAGCGCTC-GAGATAGCGATCTATCTGAACGATCGGTACA 19215685 Query 238735 AACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTAC 238794 || || || ||||| ||||| ||||| || || |||||||| || || ||| Sbjct 19215686 GCCTGGATGGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGCATAC 19215745 Query 238795 ACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAG 238854 ||||| || |||| ||| | || || || ||| | || |||||||| ||||| | Sbjct 19215746 ACGATCAGGGATGGAAGGAGCGCGAAATTTTCGGCAAAATCAGGTACATGAACTATGAGG 19215805 Query 238855 GAACTAAGAAAAAATTTGATGTAAATGCTTTT 238886 || ||| || ||| | || ||||| ||| Sbjct 19215806 GATGCAAGCGTAAGTTTAACGTCAATGCGTTT 19215837 Score = 102 bits (112), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 268750 ACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGA 268809 |||||| | ||||| |||||||| || ||||| || ||||| || | ||| | | || Sbjct 19493931 ACAGGCGGAAGCTTCCTTTTGGACCGTGGAAGAGGTCGATCTCTCCAAGGACATGAAGGA 19493872 Query 268810 TTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 |||| || | ||||| ||| | || || || | | ||||| || ||||| Sbjct 19493871 TTGGGAATCGCTGAAACCGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTGC 19493812 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | |||||||||||||||||||| || || ||| ||| | || ||||||||| | Sbjct 19493811 CGCATCCGATGGTATCGTTAACGAAAACCTGGTGGAGCGCTTCAGCCAGGAGGTACAGGT 19493752 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 | || || | || |||||||| || || ||||| || |||||| | || ||||| Sbjct 19493751 AACGGAGGCACGCTGCTTTTACGGGTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 19493692 Query 268990 GTAC 268993 |||| Sbjct 19493691 GTAC 19493688 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| ||||| ||||| || ||||| || |||||||| || || ||| Sbjct 19493453 GTAGCGTTTGCGGCTGTCGAAGGAATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGG 19493394 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| ||||||||||||| ||| | || ||||| ||||| |||| | ||| Sbjct 19493393 CTAAAGAAGCGAGGCCTTATGCCGGGACTGACCTTCTCGAACGAGCTGATTTCACGCGAC 19493334 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| | ||||| ||||| || || Sbjct 19493333 GAAGGACTGCACTGTGACTTTGCCTG 19493308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388397946024