Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq223 91.5 8e-14 seq35 86.0 3e-12 seq1 86.0 3e-12 >seq223 Length=17164539 Score = 91.5 bits (100), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||| ||||| |||| | || |||||||||| |||||||||||||||||||| Sbjct 3623131 TAAAAAATAATCACTATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 3623072 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||||||| |||| |||||||| | ||| ||||| Sbjct 3623071 CGACGCTCTAACCAGCTGAGCTATGGAGCCAGTCGA 3623036 Score = 91.5 bits (100), Expect = 8e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAA-TCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| ||||||||| || | || ||| | || |||||||||| ||||||||||||||| Sbjct 3624320 AATAAATAAAAAACTCTACTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTAT 3624261 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||||||| |||| |||||||| Sbjct 3624260 TAGCACGACGCTCTAACCAGCTGAGCTA 3624233 Score = 91.5 bits (100), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 11439 TTAATAAAAAA--TCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| |||| | ||||| ||||| | || |||||||||| ||||||||||||||| Sbjct 3656467 TTAACAAAATAGATCAAAGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTAT 3656526 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||| ||||| Sbjct 3656527 TAGCACGACGCTCTAACCAGCTGAGCTATGGGGCC 3656561 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11445 AAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 3657206 AAAAATGCACATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 3657265 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| |||| |||||||| Sbjct 3657266 GCTCTAACCAGCTGAGCTA 3657284 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11440 TAATAAAAA-ATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||||| || | | |||| | || |||||||||| ||||||||||||||||| Sbjct 3658140 TAATAAAAACATTATGTCATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTA 3658199 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| |||| |||||||| | |||| Sbjct 3658200 GCACGACGCTCTAACCAGCTGAGCTATGGAGCCG 3658233 >seq35 Length=5844712 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3080530 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 3080471 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | |||| Sbjct 3080470 CTGAGCTATGGAGCCG 3080455 >seq1 Length=31626230 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 23464065 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 23464124 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 23464125 TGAGCTATGGAGCCGT 23464140 Score = 86.0 bits (94), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 23465921 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 23465980 Query 11515 CTGAGCTAATGGGCC--GTCGAC 11535 |||||||| | ||| |||||| Sbjct 23465981 CTGAGCTATGGAGCCATGTCGAC 23466003 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 23525168 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 23525109 Query 11514 ACTGAGCTA 11522 |||||||| Sbjct 23525108 GCTGAGCTA 23525100 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489039265528