Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq646 113 4e-20 >seq1 Length=31626230 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||||||||||| || || ||||| || | ||| || ||| | Sbjct 27268427 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 27268368 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||||||| || ||| | ||||| | | ||||||||||||||| Sbjct 27268367 AGAGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 27268308 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| ||| ||||| | | ||||| Sbjct 27268307 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 27268248 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 27268247 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || ||||| || | ||| || ||| || |||| || ||| Sbjct 27268637 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 27268578 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | | ||||||||||||||||| || || ||||| | Sbjct 27268577 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268518 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| ||||| | | ||||| || | ||||||||| || Sbjct 27268517 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268458 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 27268457 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||||||||| || |||| | |||||||||||| || || Sbjct 15287634 GTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 15287575 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||||||||| || || || || ||||| | ||| || ||||| Sbjct 15287574 GCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTA 15287515 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| || || | | || || |||| ||||| || |||||||| || || Sbjct 15287514 ACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAGGGTC 15287455 Query 94991 TTCACAAAGATCTGCATG 95008 || || |||||||||||| Sbjct 15287454 TTGACGAAGATCTGCATG 15287437 >seq646 Length=9740529 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||| || | ||||||||||| || | ||| || || || |||| Sbjct 9473333 TCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACC 9473274 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | |||||||| || || || ||||| || Sbjct 9473273 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCTTCCTT 9473214 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || |||||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 9473213 ATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 9473154 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 9473153 GGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATT 9473114 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 6802109 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACA--GTGTGCGACCGTCC 6802052 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || ||| ||||||| | | |||||||| || || || || || || || Sbjct 6802051 TCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCC 6801992 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| || ||| || || | | | ||||| |||| || |||||| Sbjct 6801991 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTT 6801932 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || ||||||||||| Sbjct 6801931 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 6801900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287400732080