Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 210 3e-50 seq112 194 3e-45 seq57 188 1e-43 seq231 176 7e-40 >seq1 Length=31626230 Score = 210 bits (232), Expect = 3e-50 Identities = 209/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | | || || ||||||||||| || ||||| ||||| ||||| Sbjct 29174418 GCCAAGCGTCATCGCA-AGGTGTTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 29174360 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| ||| || |||| || |||| Sbjct 29174359 CCGCCGTCTGGCTCGCCGTGGAGGAGTGAAGCGTATCTCCGGACTGATCTACGAGGAGAC 29174300 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||||| ||| ||| |||| ||||||| | || || || Sbjct 29174299 GCGTGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTTACGTACACGGA 29174240 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||| |||||||| ||||||| || ||||||| || || Sbjct 29174239 ACACGCCAAGCGGAAGACCGTCACCGCCATGGATGTCGTCTACGCGCTGAAACGCCAGGG 29174180 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||||||| ||||| Sbjct 29174179 CCGCACGTTGTACGGTTTTGGAGGTTAA 29174152 >seq112 Length=21277816 Score = 194 bits (214), Expect = 3e-45 Identities = 203/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || |||||||| |||||||||||||| || ||| Sbjct 18885756 GCCAAGCGTCATCGTAAAGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCGGCCATC 18885697 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| |||| || | |||| ||||| | Sbjct 18885696 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCGGGTCTCATCTACGAAGAAACG 18885637 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | || | | | ||||||| |||||| || ||||||||| Sbjct 18885636 CGCGGCGTGCTGAAAGTGTTTTTGGAAAATGTTATCCGTGATGCGGTCACCTATACCGAA 18885577 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||| ||| |||||||| ||||||| || ||||||| || ||| Sbjct 18885576 CACGCCAAGCGCAAGACTGTAACCGCCATGGATGTCGTCTACGCGCTGAAACGCCAGGGC 18885517 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 18885516 CGCACGCTGTACGGTTTTGGAGGTTAA 18885490 >seq57 Length=3884199 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || || ||||||||||| || || |||||||| |||||| Sbjct 1192518 GCCAAGCGTCATCGTAAGGTGCTGCGCGATAACATCCAGGGTATTACCAAGCCCGCTATC 1192577 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || |||||| | || || || |||| || |||| Sbjct 1192578 CGCCGTCTGGCTCGCCGTGGTGGTGTGAAGCGTATTTCCGGGCTGATCTACGAGGAGACG 1192637 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||||| || ||| |||||| Sbjct 1192638 CGCGGTGTGCTGAAGGTTTTCCTGGAGAACGTGATCCGCGATGCCGTCACCTACACCGAG 1192697 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||| || || | |||||| | || || ||| ||||||| || ||| Sbjct 1192698 CATGCCAAGCGTAAGACCGTAACGGCGATGGATGTGGTATACGCACTGAAACGCCAGGGC 1192757 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| ||| ||||| Sbjct 1192758 CGTACGCTGTACGGTTTCGGAGGTTAA 1192784 >seq231 Length=3502 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || ||||||||||| || || |||||||| || ||| Sbjct 330 GCCAAGCGTCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATTACCAAGCCTGCCATC 389 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| ||||| || ||||| |||||| | || || || |||| || || | Sbjct 390 CGCCGTCTGGCCCGTCGCGGAGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAAACC 449 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| |||| | ||||| ||| |||||||| |||||| | || || || Sbjct 450 CGTGGTGTTCTGAAAGTGTTCCTGGAGAACGTTATCCGTGATGCGGTAACTTACACGGAA 509 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| | |||||| | || ||||| |||| ||||| ||| Sbjct 510 CACGCGAAGCGTAAGACCGTCACCGCTATGGATGTGGTGTATGCCCTGAAGCGTCAGGGC 569 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 570 CGCACCCTGTACGGTTTCGGAGGTTAA 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074580099854