Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24 114 2e-20 >seq24 Length=5879236 Score = 114 bits (126), Expect = 2e-20 Identities = 357/548 (65%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 || || || ||||| | || ||||| || || || | || || || || || || Sbjct 3063726 GAAATTTACAATCTGGCCGCCCAAAGCCACGTCAAGATATCGTTCGATTTGAGCGAATAC 3063667 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || | | || ||||| | || || || | | || || ||| |||||| | | ||| Sbjct 3063666 ACGGCCGAGGTAGATGCGGTCGGTACGCTACGTCTGCTGGATGCAATTCGTACGGTCGGA 3063607 Query 193767 ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT--GGTGTTC 193824 |||||| || ||| |||| || ||||| || || ||||| || |||| | Sbjct 3063606 CAGGAGAAGACGGTCCGCTTCTACCAAGCATCCACGTCGGAGCTGTACGGAAAGGTGGCC 3063547 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGG-TGTAGCA 193883 || ||| || | |||| ||||| || |||||||||| || || | ||| || Sbjct 3063546 GAGACACCGCAGAACGAGAAG--ACACCGTTCTATCCACGCTCCCCGTACGCCTGT-GCC 3063490 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGT 193943 ||| |||| ||||| ||||| | | || ||||| || | || | | ||| | Sbjct 3063489 AAGATGTACGGTTACTGGATTGTGATAAACTATCGCGAAGCGTACGATATGTTCGCCTGC 3063430 Query 193944 TCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAG 194003 ||| |||||||| |||||||| || || | | || || | ||||| || || || Sbjct 3063429 AATGGGATTCTCTTTAATCACGAGTCACCGCGCCGGGGAGAAAATTTTGTCACACGCAAA 3063370 Query 194004 ATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAAT 194063 || || | | | ||||| || | ||| ||| || || | || |||||| Sbjct 3063369 ATAACCCGCTCGGTGGCGAAGATATCGCTCGGACAGCAGGAGTACCTCGAGCTGGGTAAT 3063310 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123 ||| || | ||| | || ||||| ||||| || || || || |||||||||||| | ||| Sbjct 3063309 CTTGATTCCAAGCGTGACTGGGGCCACGCCAAAGACTACGTCGAAGCGATGTGGCTCATG 3063250 Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGA 194183 |||| ||||| | || || |||| || ||||| || || ||| | | || || | Sbjct 3063249 ATGCAGCAGGACAAGCCAGAAGATTTCGTTATTGCCACCGGGGAAACGCACTCCGTGCGG 3063190 Query 194184 GACTTTGT 194191 || ||||| Sbjct 3063189 GAGTTTGT 3063182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807548355969680