Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq24 149 1e-30 seq646 143 5e-29 >seq1 Length=31626230 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||| | || || || || || | |||| || || || || || || || ||||||| Sbjct 15287672 TTTAAATGCCACCACGCAGACGAAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTAT 15287613 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || || || | ||||| || | |||||| || ||||| || || | || || | Sbjct 15287612 AATCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGAT 15287553 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | ||||| || || |||||||| |||||||| ||||| ||| ||||||||| || | | Sbjct 15287552 CTGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCGGAAG 15287493 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||| || ||||| || |||||||||||||| |||||||| Sbjct 15287492 GCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 15287438 >seq24 Length=5879236 Score = 149 bits (164), Expect = 1e-30 Identities = 345/518 (67%), Gaps = 4/518 (1%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 |||| || ||||| || || || ||||||| ||| | ||| |||||| |||| Sbjct 3063207 CCCCGGTGGCAATAACGAAATCTTCTGGCTTGTCCTGCTGCATCATGAGCCACATCGCTT 3063266 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 |||| ||||| || |||||||| || ||||| | || | || || || ||| Sbjct 3063267 CGACGTAGTCTTTGGCGTGGCCCCAGTCACGCTTGGAATCAAGATTACCCAGCTCGAGGT 3063326 Query 268329 ATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACG 268388 | | ||||| |||||| | || | ||| || ||||| || || || || Sbjct 3063327 ACTCCTGCTGTCCGAGCGATATCTTCGCCACCGAGCGGGTTATTTTGCGTGTGACAAAAT 3063386 Query 268389 TCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCAT 268448 | || || || | || |||||| || ||||| || || ||||| |||||||| | | Sbjct 3063387 TTTCTCCCCGGCGCGGTGACTCGTGATTAAAGAGAATCCCATTGCAGGCGAACATATCGT 3063446 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || || || ||||| | || ||||||| | ||||||| ||| |||||||| | Sbjct 3063447 ACGCTTCGCGATAGTTTATCACAATCCAGTAACCGTACATCTTGGCACAGGCGTACGGGG 3063506 Query 268509 AACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG--ACTTTGCCAAAGAG 268566 | ||||||| ||| || ||| | || || || | |||||| || || || | || Sbjct 3063507 AGCGTGGATAGAACGGTGTCTTCTCGTTCTGCGG--TGTCTCGGCCACCTTTCCGTACAG 3063564 Query 268567 CTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGC 268626 ||| || || |||||||||||||| || || || | ||| | || ||||| Sbjct 3063565 CTCCGACGTGGATGCTTGGTAGAAGCGGACCGTCTTCTCCTGTCCGACCGTACGAATTGC 3063624 Query 268627 CTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAA 268686 || |||| ||| || || || | |||| || || || || || || || ||||| Sbjct 3063625 ATCCAGCAGACGTAGCGTACCGACCGCATCTACCTCGGCCGTGTATTCGCTCAAATCGAA 3063684 Query 268687 TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAA 268724 || | || ||| ||||| |||||| |||| || |||| Sbjct 3063685 CGATATCTTGACGTGGCTTTGGGCGGCCAGATTGTAAA 3063722 >seq646 Length=9740529 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || || ||||| || ||||| Sbjct 6802126 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 6802067 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| ||||| || || || | || || || || || Sbjct 6802066 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 6802007 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||| || |||||| || || | | || || Sbjct 6802006 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 6801947 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| ||||||||||| |||||||| |||||||| Sbjct 6801946 TCAAGGGTAATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 6801900 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 9473350 TACTTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAG 9473291 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || || | ||||| || | |||||| |||||||| ||||| | || || || Sbjct 9473290 TCCGACAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCC 9473231 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || |||||||| || || ||||||||||| || ||||| ||||| | | Sbjct 9473230 GGGGGGATTCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGC 9473171 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || || | |||||||| || || ||||| || || ||||| |||||||| || || Sbjct 9473170 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATTCT 9473112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614589250160