Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq24 116 4e-21 seq668 111 2e-19 seq112 100 3e-16 >seq24 Length=5879236 Score = 116 bits (128), Expect = 4e-21 Identities = 277/411 (67%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || |||||||| | |||||| ||| || || || || | || || || ||| || Sbjct 3063585 TACCAAGCATCCACGTCGGAGCTGTACGGAAAGGTGGCCGAGACACCGCAGAACGAGAAG 3063526 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGC-GTCTCAAAGGTTGCGGCACATTGGCTCGT 8644 ||||| ||||||||||| ||| || | | || ||| | ||| | ||| | || Sbjct 3063525 ACACCGTTCTATCCACGCTCCCCGTACGCCTGTGCCAAGATGTACGG-TTACTGGATTGT 3063467 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 || || || || ||| | || | | | || || ||| || |||||||| || ||||| Sbjct 3063466 GATAAACTATCGCGAAGCGTACGATATGTTCGCCTGCAATGGGATTCTCTTTAATCACGA 3063407 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATCAAACAA 8762 |||||| || || || |||| || ||| || || | ||| | ||| | || | Sbjct 3063406 GTCACCGCGCCGGGGAGAAAATTTTGTCACACGCAAAATAACCCGCTCGGTGGCGAAGAT 3063347 Query 8763 ATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 8822 |||| | | || || ||||| | | || |||| || || | || || | |||||| Sbjct 3063346 ATCG-CTC-GGACAGCAGGAGTACCTCGAGCTGGGTAATCTTGATTCCAAGCGTGACTGG 3063289 Query 8823 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 8882 || |||||||| ||||| || ||||| ||||||||| | | || || || || | || Sbjct 3063288 GGCCACGCCAAAGACTACGTCGAAGCGATGTGGCTCATGATGCAGCAGGACAAGCCAGAA 3063229 Query 8883 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 || | || | || || ||||| || |||||||| ||||||| || ||| Sbjct 3063228 GATTTCGTTATTGCCACCGGGGAAACGCACTCCGTGCGGGAGTTTGTAGAG 3063178 >seq668 Length=6225679 Score = 111 bits (122), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 171881 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 171937 |||||||||||||| | || | ||| ||| || |||||| | |||||||| || || Sbjct 1120236 GTGAAGATGTACCTAG---GACTGGCGCTATCCTTTCCACCCGTCAGACGCGTACCGAAC 1120292 Query 171938 TGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 171997 ||||||| ||| | || |||||||| || || || | |||| | |||||| ||| Sbjct 1120293 TGACCACCCGGATAGAGCAGATTGATGTTATTGCTTCCGACATAGTTCTGGGCCAAATTG 1120352 Query 171998 ACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATAC 172057 || ||||| ||| || |||||||||||||||||||||||| || || || | Sbjct 1120353 ACGATCGTCGAACAGAGCGACTGTTCACCGTGATGGTAGGCCGACTTCTCTGCAACCGAT 1120412 Query 172058 GCCGCCAACTGTGCCACCTTCATCTC 172083 | |||||||| || ||||| | ||| Sbjct 1120413 CCGGCCAACTGGGCTACCTTAACCTC 1120438 >seq112 Length=21277816 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || || ||||| || || || || || ||||||||| |||||| Sbjct 19493310 GGCAAAGTCACAGTGCAGTCCTTCGTCGCGTGAAATCAGCTCGTTCGAGAAGGTCAGTCC 19493369 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| || || |||||||| | ||||||||| || ||| ||| ||||||||| Sbjct 19493370 CGGCATAAGGCCTCGCTTCTTTAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGAT 19493429 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || ||| ||| ||||| | || ||| || ||||| Sbjct 19493430 TCCTTCGACAGCCGCAAACGCTACGACACGTTCGCCAAAG 19493469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348537428240