Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq113 181 1e-40 seq646 132 5e-26 seq1 116 4e-21 >seq113 Length=1764599 Score = 181 bits (200), Expect = 1e-40 Identities = 739/1143 (65%), Gaps = 50/1143 (4%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| | || | | ||||||| || ||||||| |||||||||||| || Sbjct 1504303 GTCTACCGTGAACTGGATTGCATTAACGGCCGGCTTGGTGCGCAAATAGTACATGCCCGT 1504244 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA---TGACCGAGTACGTGGG 145835 ||| || ||| ||| ||| || || || || || || | ||| || | Sbjct 1504243 CTTCAGTCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCG---G 1504187 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 ||||| || | || | ||||| |||||| || || | | || ||||| || Sbjct 1504186 CTCGGCCACGTGTATGTTGAACGATTGTGACTGATCGATAAATGCCCCGCGATCGGCAGC 1504127 Query 145896 CATGTCTATCATGCACTTTGATTTA-----ATTTCCCATGCGGTTTTAAAGAGATCCTTG 145950 ||| | | |||||| || |||| || ||||| | ||||| |||| || | Sbjct 1504126 CATTT---TAATGCACGTT--TTTACCGAAATCTCCCACACCGTTTTGTAGAGGTCGCGG 1504072 Query 145951 ACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTG 146010 | | ||| || || ||||||||||| | || ||||| | | ||| || ||||| Sbjct 1504071 ATCTCCTGCGGAATCGATTCAATGTTCTGAATGGAACCATTATTAGACAAAATGTTGTTC 1504012 Query 146011 CGCAATTCTGGAGTGTAAATGTTCA----AGTCTACGAGGGCCTTGATGAGATACTGGTT 146066 || || || | | | || |||| || | | | |||| ||||| Sbjct 1504011 TTCATATCGAGATCCCATAGGCCCATCGCAGTC----AGATCTTGCAGTAGATGATGGTT 1503956 Query 146067 GACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTC 146126 |||||||| |||||||| | || || || | || ||||| ||| ||||||| Sbjct 1503955 CACCACCTGGAACTCGCCCGATAGCACACGTCGATTGTAAACGTTCGACGTGTACGGCTC 1503896 Query 146127 GAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAG 146186 ||| ||||| ||||| || | || |||||||||| |||||| ||||| |||| ||| Sbjct 1503895 GAAAGACTCATTGTTGCCCAAAATTTGCGCCGTCGAAGCGGTCGGCATCGGGGCCAACAG 1503836 Query 146187 CAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCCGTAGTTTGGACCAATTCCACA 146245 | || || | | |||||| ||||| ||||| || || | | ||| ||||| | Sbjct 1503835 TAGCGAATTACGAATGCCGTG-CTTTGCGATCTTCTCTTTCAGCTCAGCCCAGTTCCAAA 1503777 Query 146246 AATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGC 146305 ||||||| || | | || | | ||||| |||| | |||| | || || | Sbjct 1503776 ---GATCCGTCGGTTCCTTCTTCCACATCTCGTATTGCAAAATGCCTTTGCTCACCGGAC 1503720 Query 146306 TATTCT-CGTACGATTCATAAGGACCGTCGATCTTG--GCCAGTTCGCAGCTAGCTTCCA 146362 | | || | || | || || ||||| || | || |||| |||||||||||||||| Sbjct 1503719 T-TCCTGCATATGTCTCGTACGGACCTTCC--CGTGCTGCCAACTCGCAGCTAGCTTCCA 1503663 Query 146363 GAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCTCGCTG 146421 | ||| | |||| |||| || || ||| | | ||| || ||||| ||||| Sbjct 1503662 GCGCCCCATAGTAAATGGATTCAAATAT-TTGTTGATTCAGCTTTTGTGCCTCTTCGCTT 1503604 Query 146422 TCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAAC 146480 ||||| ||||| || | | | || || ||||| | ||||| | |||| ||| | Sbjct 1503603 TCGTA-TGGATAGCGCATCAAAATGAATGCATCGGCCATGCCCTGCACACCGATACCGAT 1503545 Query 146481 GGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGAT 146540 ||| | || | | || | | || ||| ||||||| |||| ||||||| Sbjct 1503544 GGGCCTATGGCGCATATTGGAGCGCTTTGCTTCCGGTACCGGATAGTAGTTGATGTCGAT 1503485 Query 146541 GATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAA 146600 ||| ||||| ||||| ||| || || || | | | |||||| || |||| | Sbjct 1503484 GATTTTGTTCAGATTGCGCGTAACGATCTTGGCGACATCCTTCAGCTTCGCAAAGTCGTA 1503425 Query 146601 TGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGC 146660 || | | | | | || ||| || |||| | || || ||||||| || || || || Sbjct 1503424 TG---TCCTGTCAGCCTTTACGAACATGTTCAGTGCAATCGAGGCCAGATTGCAAACCGC 1503368 Query 146661 AGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGA 146719 | |||| || || | || |||||| |||||| |||| ||| | |||| |||||| ||| Sbjct 1503367 AATCTCATCTTTCGACG-AATACTCCACAATTTCGGTGCACAAGTTGGAGCACTTAATGG 1503309 Query 146720 TGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTC 146779 | || | || | |||||| || ||||| | |||||||| ||||| |||||| Sbjct 1503308 TTCCAACGTTCTGTTGGTTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTA 1503249 Query 146780 CCCCGGTTTCGACATTGGTCTCGACGAT---GAATCTAAACAAATCTCTGGCCTTTACTT 146836 | || ||||| || | | || | ||| ||| | |||||||| ||||| || | Sbjct 1503248 CGCCCGTTTCCACCTGCGATTCAATGATCGCGAACC---ACAAATCTTGCGCCTTCACCT 1503192 Query 146837 GTC 146839 ||| Sbjct 1503191 GTC 1503189 >seq646 Length=9740529 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | ||||| || || ||||| ||||| || | Sbjct 9473344 CCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 9473285 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 9473284 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGG 9473225 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || ||| | | ||||| ||||||| | |||||| Sbjct 9473224 ATTCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACC 9473165 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 9473164 TCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 9473117 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | ||||| ||| | || ||||| || ||||| ||||| ||| Sbjct 6802129 GCGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCG 6802070 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| || || ||||| || || || |||||| ||||||||||| || Sbjct 6802069 GACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGC 6802010 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||| ||| ||| ||| ||| | | |||| || |||| |||| Sbjct 6802009 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 6801950 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 6801949 ACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 6801900 >seq1 Length=31626230 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| || ||||| ||| || Sbjct 27268409 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27268350 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| |||||| ||||||||||| ||||| ||||||||||||||| | Sbjct 27268349 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268290 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| ||||||| |||||| || | || | || ||| Sbjct 27268289 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268230 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 27268229 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 27268656 TCCCCCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 27268597 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| || || ||||| || || ||| |||||| ||||||||||| ||||| Sbjct 27268596 CAGAGTGCGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGG 27268537 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||| | | |||| ||||||| |||||| Sbjct 27268536 AATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGAC 27268477 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 27268476 CTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || ||||| || ||||| | Sbjct 15287664 CCACCACGCAGACGAAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCCGAC 15287605 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 15287604 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGG 15287545 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| ||| || | | ||| || Sbjct 15287544 ATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACC 15287485 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || ||||| || || || || ||||||||| Sbjct 15287484 TCAAGGGTGATCGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATG 15287437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496770130720