Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24 111 2e-19 seq668 107 2e-18 >seq24 Length=5879236 Score = 111 bits (122), Expect = 2e-19 Identities = 275/411 (67%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 10500 || |||||||| | |||||| ||| || || || || | || || || ||| || Sbjct 3063585 TACCAAGCATCCACGTCGGAGCTGTACGGAAAGGTGGCCGAGACACCGCAGAACGAGAAG 3063526 Query 10501 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 10559 || || ||||||||||| ||| || | | | ||| | | ||| | ||| | || Sbjct 3063525 ACACCGTTCTATCCACGCTCCCCGTACGCCTGTGCCAAGATGTACGGTT-ACTGGATTGT 3063467 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 || || ||||||||| | || | | | || | ||| || |||||||| || ||||| Sbjct 3063466 GATAAACTATCGCGAAGCGTACGATATGTTCGCCTGCAATGGGATTCTCTTTAATCACGA 3063407 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATCAAACAA 10677 |||||| || || || |||| || ||| || || | ||| | ||| | || | Sbjct 3063406 GTCACCGCGCCGGGGAGAAAATTTTGTCACACGCAAAATAACCCGCTCGGTGGCGAAGAT 3063347 Query 10678 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 10737 ||| | || || ||||| | | || |||| || || | || || | |||||| Sbjct 3063346 ATC--GCTCGGACAGCAGGAGTACCTCGAGCTGGGTAATCTTGATTCCAAGCGTGACTGG 3063289 Query 10738 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGAC 10797 || |||||||| ||||| || ||||| ||||||||| | | || || || || | || Sbjct 3063288 GGCCACGCCAAAGACTACGTCGAAGCGATGTGGCTCATGATGCAGCAGGACAAGCCAGAA 3063229 Query 10798 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || | || | || || ||||| || |||||||| ||||||| || ||| Sbjct 3063228 GATTTCGTTATTGCCACCGGGGAAACGCACTCCGTGCGGGAGTTTGTAGAG 3063178 >seq668 Length=6225679 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||||| | || | ||| ||| || |||||| | |||||||| || || Sbjct 1120236 GTGAAGATGTACCTAG---GACTGGCGCTATCCTTTCCACCCGTCAGACGCGTACCGAAC 1120292 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||||| || | || |||||||| || || || | ||||| | ||||| ||| Sbjct 1120293 TGACCACCCGGATAGAGCAGATTGATGTTATTGCTTCCGACATAGTTCTGGGCCAAATTG 1120352 Query 176018 ACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATAC 176077 || ||||| ||| || |||||||||||||||||||||||| || || || | Sbjct 1120353 ACGATCGTCGAACAGAGCGACTGTTCACCGTGATGGTAGGCCGACTTCTCTGCAACCGAT 1120412 Query 176078 GCCGCCAACTGCGCCACCTTCATCTC 176103 | |||||||| || ||||| | ||| Sbjct 1120413 CCGGCCAACTGGGCTACCTTAACCTC 1120438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502000526480