Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq113 143 4e-29 seq112 127 3e-24 >seq113 Length=1764599 Score = 143 bits (158), Expect = 4e-29 Identities = 332/498 (67%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| ||||| ||||||||||| || || || ||||| ||| || | | || |||||| Sbjct 1504312 CTTCGATTTGTCTACCGTGAACTGGATTGCATTAACGGCCGGCTTGGTGCGCAAATAGTA 1504253 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| ||||| || ||| ||| ||| ||||| | || || || | ||| |||| Sbjct 1504252 CATGCCCGTCTTCAGTCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATA 1504193 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || ||||||| ||| ||||| | || || || ||||| || | | | ||||| Sbjct 1504192 GTTCGGCTCGGCCACGTGTATGTTGAACGATTGTGACTGATCGATAAATGCCCCGCGATC 1504133 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| || || || || |||||||||||||||||| ||| | | ||| | Sbjct 1504132 GGCAGCCATTTTAATGCACGTTTTTACCGAAATCTCCCACACCGTTTTGTAGAGGTCGCG 1504073 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | | || || | || | | || ||| || || || || | | || | | Sbjct 1504072 GATCTCCTGCGGAATCGATT-CAATGTTCTGAATGGAACCATTATTAGACAAAATGTTGT 1504014 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | || |||| | ||||| | |||| || ||| || || |||| | Sbjct 1504013 TCTTCATATCGAGATCCCATAGGCCCATCGCAGTCAGATCTTGCAGTAGATGATGGTTCA 1503954 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || || ||||| | ||| || | | ||| ||| | || |||| Sbjct 1503953 CCACCTGGAACTCGCCCGATAGCACACGTCGATTGTAAACGTTCGACGTGTACGGCTCGA 1503894 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | | ||| |||||||| ||||| || || || || || ||||| || |||| || | Sbjct 1503893 AAGACTCATTGTTGCCCAAAATTTGCGCCGTCGAAGCGGTCGGCATCGGGGCCAACAGTA 1503834 Query 204312 GGGAGTTGCGCACACCGT 204329 | || || || | |||| Sbjct 1503833 GCGAATTACGAATGCCGT 1503816 Score = 93.3 bits (102), Expect = 7e-14 Identities = 428/668 (64%), Gaps = 12/668 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| || |||||||||||||| |||||| | || || | ||| ||||| Sbjct 1503346 CTCCACAATTTCGGTGCACAAGTTGGAGCACTTAATGGTTCCAACGTTCTGTTGGTTGCT 1503287 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || || || || | |||||||||| ||| |||| | || | |||| ||| ||| Sbjct 1503286 TTTACGATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTC 1503227 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 | || | |||||| || | |||| ||| || || || | | || | Sbjct 1503226 AATGATCGCGAACCACAAATCTTGCGCCTTCACCTG--TCGAATAAAGCGTCCCTCTTTT 1503169 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| |||||||||| | | || || || | || || || ||||| Sbjct 1503168 TCGTAACCGGTGTACAGCGTCTCGAACTCTTCGCCCCAAGTTTCTGCCAATCCGGGACAA 1503109 Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | ||||||||||| |||||| | | ||| || | |||| || ||| |||||||| Sbjct 1503108 TCGTGAGGACACATCAGGCTCCACATTTCGTTCGCCTCT-ACCCGCTTCATGAACAGGTC 1503050 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 |||||||| |||| |||| || || || | | | || | || |||||| Sbjct 1503049 CGGTATCCACAGTGCGTAGAACATGTCGCGTGCACGCACCTCCTCCTTGCCGGTGTTCTT 1502990 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 || | ||||| || || | | ||| ||||||| || || | | | ||| | | Sbjct 1502989 CTTTAGATCCAGA-AACTCGAATACATCGCCGTGCCATGGTTCGAGGTATATGGCAAAAG 1502931 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| ||||| |||||||||||||| |||| | | |||| | || |||| Sbjct 1502930 CTCCCGGCCGTTTGTTGCCACCCTGGTCCACATACCGAGCCGTATTGTTGTACACGCGCA 1502871 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 |||| || |||| ||||| | |||||||||| | | |||| || || | || | Sbjct 1502870 GCATTGGTACCAATCCGTTCGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCAC 1502811 Query 205419 --TCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTC 205476 || || | | | || ||||| ||||||| | | || | ||| | ||||||| Sbjct 1502810 GAATACAGTGCACGT-TCAGC-CCAATTCCGCCAGCAGATTTTGAAATCAGCGCGCACTG 1502753 Query 205477 TTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGA 205536 | ||| ||| |||||| ||| | || ||||| | || || | |||| | || || Sbjct 1502752 CTTCAGCGTGTCGTAGATACCTTCAATACTGTCGTCAGACATGGTTAGCAGAAAACAGGA 1502693 Query 205537 AGCCAGCT 205544 | || || Sbjct 1502692 TGACAACT 1502685 >seq112 Length=21277816 Score = 127 bits (140), Expect = 3e-24 Identities = 234/340 (69%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || ||||| || || ||||| || | ||||| | || ||||| || || | Sbjct 19493133 CAGCAAACGATCGGCCACGAACTCAATGTA-CTGCGACATCAGTTCGCAGTTCATACCGA 19493191 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || || ||| || | ||| ||| | ||||| || | Sbjct 19493192 GCATATCGACCGGCAGGGCCTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGGA 19493251 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 || | || || || || | || || || | | | ||| |||| |||| Sbjct 19493252 TGATGTCCGTCACCCGCTCCTTGGAAGGTTTCTGCACCA---GATACTTGAACATCAGGC 19493308 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| ||||||||||| ||||| || || || | |||||| || | | | || | Sbjct 19493309 AGGCAAAGTCACAGTGCAGTCCTTCGTCGCGTGAAATCAGCTCGTTCGAGAAGGTCAGTC 19493368 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | || ||| || ||||| |||||||| ||||| |||||| || |||| Sbjct 19493369 CCGGCATAAGGCCTCGCTTCTTTAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGA 19493428 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | || || || ||||||||||| |||| | || ||||| Sbjct 19493429 TTCCTTCGACAGCCGCAAACGCTACGACACGTTCGCCAAA 19493468 Score = 86.0 bits (94), Expect = 1e-11 Identities = 167/241 (69%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 |||||||| || |||||||||||| || || || ||||| ||| || | ||| Sbjct 19493686 GAGTACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAACCCGTAAAAGCAGCGTGCC 19493745 Query 160274 TCCAGATA-CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 ||| | || ||| |||||||| |||| | | |||| || | ||||| | || || Sbjct 19493746 TCC-GTTACCTGTACCTCCTGGCTGAAGCGCTCCACCAGGTTTTCGTTAACGATACCATC 19493804 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC- 160391 || || |||||||| || | |||||| ||||||||||| | ||| || ||| || Sbjct 19493805 GGATGCGGCAAAGAAGGCAAGCACGTGCGAGATGAAATGACGTTCG-CTCGGTT---TCA 19493860 Query 160392 TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAG 160451 | |||||| | ||| ||| | || | ||| ||||||||| || ||||| || || Sbjct 19493861 GCGATTCCCAATCCTTCATGTCCTTGGAGAGATCGACCTCTTCCACGGTCCAAAAGGAAG 19493920 Query 160452 C 160452 | Sbjct 19493921 C 19493921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148461059680