Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq112 224 1e-53 seq646 136 4e-27 seq1 125 7e-24 >seq112 Length=21277816 Score = 224 bits (248), Expect = 1e-53 Identities = 294/407 (72%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 |||||||||||||| ||||| |||||||| |||||| || | || |||| | ||| Sbjct 19493143 TCGGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATACCGAGCATATCGACC 19493202 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 ||||| || | || | ||| ||||||||| | ||||| || || ||| ||| | Sbjct 19493203 GGCAGGGCCTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGGATGATGTCCGTC 19493262 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 || ||| || | || ||||||| || ||||||||||| ||| |||||||| || Sbjct 19493263 ACCCGCTCCTTGGAAGGTTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCACAG 19493322 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| || ||||| | ||||| || ||||| ||| |||| || ||||| ||||| Sbjct 19493323 TGCAGTCCTTCGTCGCGTGAAATCAGCTCGTTCGAGAAGGTCAGTCCCGGCATAAGGCCT 19493382 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || || || ||||| || |||||||| || || || ||||||| || ||||| ||| Sbjct 19493383 CGCTTCTTTAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATTCCTTCGACAGCC 19493442 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || || || | || ||||| || | || | ||||| | ||||||| ||| ||| Sbjct 19493443 GCAAACGCTACGACACGTTCGCCAAAGTTTGCCTTCTTGCTCGAGATCCAGTTCAGTGCC 19493502 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 || || ||||| | || |||||||||| |||||| ||||| || || Sbjct 19493503 CAGTCTGCCTTCTTCTTCACGCACGGCAACGTTTCAATGGCATTGAA 19493549 Score = 170 bits (188), Expect = 2e-37 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 ||| ||||| |||||||| || || ||||| || ||| || || ||||| || || Sbjct 19493661 ACGAACGTACGTGTCGATTAGCAGTGAGTACATCTCGCTGTGCACATTTTCCATCGCTAT 19493720 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 |||||| ||||||||||| || ||||| ||||| || || || ||| ||||| || Sbjct 19493721 TTGAAACCCGTAAAAGCAGCGTGCCTCCGTTACCTGTACCTCCTGGCTGAAGCGCTCCAC 19493780 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||| |||||||| ||||| || ||| ||||| || ||||| ||||||||| |||||| Sbjct 19493781 CAGGTTTTCGTTAACGATACCATCGGATGCGGCAAAGAAGGCAAGCACGTGCGAGATGAA 19493840 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 ||| || ||| | ||| |||| ||||| || | |||||||||| || || |||| Sbjct 19493841 ATGACGTTCGCT-CGGTTTCAGCGATTCCCAATCCTTCATGTCCTTGGAGAGATCGACCT 19493899 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || ||||||||||| || || || || Sbjct 19493900 CTTCCACGGTCCAAAAGGAAGCTTCCGC 19493927 >seq646 Length=9740529 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||||||||| ||||| |||||||| | || |||||| | | Sbjct 9473118 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 9473177 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| || || || ||||| ||| | || || Sbjct 9473178 GACACGATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCAG 9473237 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 9473238 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCGGACTACAAC 9473297 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || ||| |||||||||| Sbjct 9473298 ATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCG 9473332 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| |||||||| ||| | || |||||| || Sbjct 6801897 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCC 6801956 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-A 38359 | || | | | | | || | || |||| || || ||||| || ||||||| | Sbjct 6801957 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCAT-CCCGCCGGA 6802015 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | || || || |||||||| |||| ||||| || |||||| Sbjct 6802016 TCAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTA 6802075 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||||| |||| || ||| ||||||| || || | || ||| Sbjct 6802076 CAACATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGC 6802127 >seq1 Length=31626230 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 27268429 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268488 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 27268489 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 27268547 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 27268548 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 27268607 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| |||| ||||| || ||| || | || || Sbjct 27268608 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGGGG 27268655 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 27268201 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268260 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 27268261 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 27268319 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | ||||| || ||||||||| Sbjct 27268320 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27268379 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| |||| ||||| || ||| || | || || Sbjct 27268380 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGG 27268427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168561035520