Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq113 129 7e-25 seq112 100 3e-16 >seq113 Length=1764599 Score = 129 bits (142), Expect = 7e-25 Identities = 374/574 (65%), Gaps = 4/574 (1%) Strand=Plus/Minus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 || || ||||| | ||| | || || || ||||| || | || ||| | ||||||||| Sbjct 1503009 TCCTCCTTGCCGGTGTTCTTCTTTAGATCCAGAAACTCGAATACATCGCCGTGCCATGGT 1502950 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || | ||||| || | | || || ||||| || || || || || | ||| | || Sbjct 1502949 TCGAGGTATATGGCAAAAGCTCCCGGCCGTTTGTTGCCACCCTGGTCCACATACCGAGCC 1502890 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 |||||||| || || | | |||||| || | || || || || || || || || || Sbjct 1502889 GTATTGTTGTACACGCGCAGCATTGGTACCAATCCGTTCGAAATCCCGTTCGTACCGGAG 1502830 Query 48444 ATATAACTTCCACTAGCTCTTATAT--TACTAATTGAAATACCTATACCACCTGCCATTT 48501 || || |||| | || | ||| | | || | || || || || || || Sbjct 1502829 ATGTACGTTCCCTTCGCACGAATACAGTGCACGTTCAGC--CCAATTCCGCCAGCAGATT 1502772 Query 48502 TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 | || || || || ||| | || || || || || || ||||| ||||| || || || Sbjct 1502771 TTGAAATCAGCGCGCACTGCTTCAGCGTGTCGTAGATACCTTCAATACTGTCGTCAGACA 1502712 Query 48562 TATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTG 48621 | ||| |||||||| |||| ||||| | ||| | | || | || | Sbjct 1502711 TGGTTAGCAGAAAACAGGATGACAACTGCGGGCGCTGCGTTGCCGCTGCGAACATGGTAG 1502652 Query 48622 GAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTA 48681 | || ||||| |||| | ||| || | ||| || ||||| || || | | ||| | Sbjct 1502651 GTGAGGCATGGGTAAAGTAGCGCTCCGACAGCAAATTGTATGTCTCGATGGCTGCATCGA 1502592 Query 48682 TATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 |||| ||| ||||| || | || ||||| ||||| | || |||| |||||| | Sbjct 1502591 TATCTTCACCATGAATACCGATCGCAACGCGCATCAACATGTGCTGCGGTCGTTCAACGA 1502532 Query 48742 TTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGT 48801 | ||| || ||||| ||||| ||| |||||| ||||| || || |||||||||| Sbjct 1502531 TCTTGCCCCGGATCTTCAACAGATAGGATCGTTCCAAAGTTTTGAAGCCGAAATAGTTGT 1502472 Query 48802 ATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || ||| || ||| | ||| || | ||||| Sbjct 1502471 ATCCAAAATCACGATCGTAAATGATAGCCGAATT 1502438 >seq112 Length=21277816 Score = 100 bits (110), Expect = 3e-16 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| || ||||||| || ||||| ||||| || ||||| ||||| | |||| Sbjct 19493290 AGATACTTGAACATCAGGCAGGCAAAGTCACAGTGCAGTCCTTCGTCGCGTGAAATCAGC 19493349 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | || ||||| || |||| || |||| |||||| || | ||| Sbjct 19493350 TCGTTCGAGAAGGTCAGTCCCGGCATAAGGCCTCGCTTCTTTAGCCAGAAAATGGCGGCA 19493409 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| || ||||| || || ||||| || || | | ||| ||| | Sbjct 19493410 AAGCTACCGCTGAAGAAGATTCCTTCGACAGCCGCAAACGCTACGACACGTTCGCCAAAG 19493469 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | || | || | ||||| ||||||||||| || |||||||| || || || ||| Sbjct 19493470 TTTGCCTTCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTCACGCACGGC 19493529 Query 19183 ATTGTCTCTATAGAATTAAATAG 19205 | || || || | ||| ||||| Sbjct 19493530 AACGTTTCAATGGCATTGAATAG 19493552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104036127920