Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-24 seq46 87.8 1e-11 >seq1 Length=31626230 Score = 129 bits (142), Expect = 5e-24 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || ||||| || |||| || | || ||||| ||| Sbjct 3914710 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTTTTCCAGCACGGCAAAGTAGAA 3914769 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || |||||| |||| || ||||| |||||| | ||||| || || Sbjct 3914770 ATCATTGCCAATGACCAGGGTAACCGAACCACACCATCGTATGTTGCCTTCACTGACACG 3914829 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | |||| ||||| || || | || |||| || || || ||||| || Sbjct 3914830 GAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCGACCAACACG 3914886 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || ||||| |||||| | ||||| | | ||| | ||| | | | ||||| || Sbjct 3914887 ATCTTCGATGCCAAACGTCTGATTGGCCGCAAGTTTGACGATCCCGCCATCCAGGCCGAC 3914946 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||| ||||| ||| Sbjct 3914947 ATGAAGCACTGGCCGTTC 3914964 >seq46 Length=4259651 Score = 87.8 bits (96), Expect = 1e-11 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716 ||| || |||| || || || || ||| | || || ||||||||| |||||||||||||| Sbjct 3520173 GTAATAGTTGACTTCTCGTCGCCCAATGTGGCTAAGGAAATGCATGTTGGACATTTGCGT 3520232 Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGT-GGAAGTAAAGTTCA 930775 || ||||| |||||||| || | ||| |||| || | |||| || | | || | Sbjct 3520233 TCGACCATAATTGGAGATTCGATTTGTCGATT-CCTGGAGTTTGTGGGGCATGATGTACT 3520291 Query 930776 TCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCT 930827 ||| | || || || || || ||||| || || || || ||| | |||||| Sbjct 3520292 TCGTATTAACCACATCGGAGACTGGGGCACGCAGTTCGGCATGCTGATTGCT 3520343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029260144302220