Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq646 118 8e-22 seq1 98.7 8e-16 >seq646 Length=9740529 Score = 118 bits (130), Expect = 8e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| ||| || || ||| || ||||| ||||| || | Sbjct 6802128 CGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 6802069 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | ||| |||| |||| ||||||||||||||| ||||| ||||| ||||||| | Sbjct 6802068 ACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCG 6802009 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||| || ||||| || ||| | | | || || | ||| | Sbjct 6802008 GGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGA 6801949 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | ||||| ||||| ||||| | ||||| || || ||||||||| || Sbjct 6801948 CCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 6801896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||| Sbjct 9473335 AGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGA 9473276 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| ||||||| ||| | || ||| Sbjct 9473275 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCTTCC 9473216 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||| ||||| | || Sbjct 9473215 TTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 9473156 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 9473155 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 9473118 >seq1 Length=31626230 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || ||| | || |||| |||| |||||||||||| || Sbjct 27268620 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTACCGGCGAA 27268561 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| ||||| | |||| |||||||||||| ||||| || || Sbjct 27268560 GATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 27268501 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| ||| || || || || |||| || || || Sbjct 27268500 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 27268441 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 27268440 GAAGATCTGCAT 27268429 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || ||| | || | || |||| |||||||||||| || Sbjct 27268392 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGCTTACCGGCGAA 27268333 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| ||||| | |||| |||||||||||| ||||| || || Sbjct 27268332 GATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 27268273 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| ||| || || || || |||| || || || Sbjct 27268272 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 27268213 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 27268212 GAAGATCTGCAT 27268201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || || || ||||| || ||||| || ||| | || | || ||| Sbjct 15287646 ACCAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCC 15287587 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| ||||| ||||| | || | ||||||||||| | Sbjct 15287586 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGA 15287527 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||||||||| | || ||||| ||| Sbjct 15287526 ATCTTGGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTT 15287467 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || || |||||||| Sbjct 15287466 CCAGTCAGGGTCTTGACGAAGATCTGCAT 15287438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAG 48597 ||| ||| | || || | ||||| ||| | ||| | || | | || ||||||||||||| Sbjct 15285021 GCCACCCTTAAGTCGGAGCACCAGATGCATCGTTGATC-CGTGCTGGATATTGTAATCAG 15284963 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | ||| | || |||||||| || |||||||| || | ||||| || || | | Sbjct 15284962 ATATGATCCGACCCTCATCCAACTGTTTGCCGGCAAAGATAATACGCTGCTGGTCGGGTG 15284903 Query 48658 GAACGCCCTCCTTGTCGCTAAT----CTTTTGTTTTACAGAACCCACAGACTCTGACGCC 48713 || ||||| || | || ||||| | | || |||| | ||| || || Sbjct 15284902 CAATACCCTCGCGTTCCATGATTTTATTTTTGATGTCCAAAACC----GTCTCCGAGGCG 15284847 Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | | || | || |||||||| ||||| || ||||||||||| |||||||| Sbjct 15284846 ACAGCATCAAGGGTGATCGTTTTACCCGTTAACGTTTTTACAAAGATCTGCAT 15284794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934452264994