Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq231 138 1e-26 seq35 118 1e-20 seq112 105 8e-17 seq586 87.8 2e-11 >seq231 Length=3502 Score = 138 bits (152), Expect = 1e-26 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||| || || ||||||||||| ||||||| || Sbjct 2853 GCTTGGCCAGCTCACCGGGCAGGAGCAGACGGACAGCGGTCTGGATTTCGCGCGATGTGA 2794 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| ||| ||||| | | ||||| |||| | Sbjct 2793 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGATGCCTCCGCAGCAATGCGTTCGAAAA 2734 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| ||||| |||||||| ||| | ||| |||||||| ||| |||| Sbjct 2733 TATCGTTCACAAAGCTGTTCATGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGT 2674 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| ||||||||||||||| Sbjct 2673 GCACTTGCTTCAGCACCTTGTAGATG 2648 >seq35 Length=5844712 Score = 118 bits (130), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| ||||||| || || | || || ||| ||| Sbjct 1216302 AAGCGCACCGACGACATCAGTTCGTGGGATGCTGATTTCCTGAAGGTGGACCAGGGCACG 1216361 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || || | ||||| || || ||||| | ||||||||| |||| | ||| | | Sbjct 1216362 CTGTTCGAACTCATCCTGGCGGCAAACTATTTGGACATCAAGGGTCTGTTGGATGTGACG 1216421 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| ||||||||||||||||| | || || ||||| |||||||| || Sbjct 1216422 TGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGACGTTC 1216481 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 1216482 AACATCAAGAACG 1216494 >seq112 Length=21277816 Score = 105 bits (116), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| |||| ||||| |||| || || ||||| ||||| |||||| Sbjct 19493329 CCTTCGTCGCGTGAAATCAGCTCGTTCGAGAAGGTCAGTCCCGGCATAAGGCCTCGCTTC 19493388 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || |||||| || || || ||| ||||| || ||||| || ||||| Sbjct 19493389 TTTAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATTCCTTCGACAGCCGCAAAC 19493448 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || || ||| ||||| | ||| |||| | |||||| |||| ||| Sbjct 19493449 GCTACGACACGTTCGCCAAAGTT------TGCCTTCTTGCTCGAGATCCAGTTCAGTGCC 19493502 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| ||| |||| |||||| ||| || ||||| Sbjct 19493503 CAGTCTGCCTTCTTCTTCACGCACGGCAACGTTTCAATGGC 19493543 >seq586 Length=1106 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | ||| || ||||| || ||||| ||||| | || Sbjct 706 GCTTGGCCAACTCACCAGGCAACAGCAGACGGACGGCCGTTTGGATTTCGCGGGACGTGA 647 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| ||||||||| ||| || |||| ||||||| |||| | Sbjct 646 TCGTCGAACGCTTGTTGTAGTGCGCCAAGCGGGATGCTTCGGCAGCGATGCGCTCGAAAA 587 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| |||| || || || || || | Sbjct 586 TGTCGTTCACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAAATTCCGGTATCCGGAT 527 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || | ||||||||||||| Sbjct 526 GGACTTGTTTCAACACCTTGTAGATG 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107083560144926