Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq646 138 2e-27 seq1 134 3e-26 seq112 113 9e-20 >seq646 Length=9740529 Score = 138 bits (152), Expect = 2e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || |||||||| ||||| || || || || || ||| | | ||| Sbjct 9473332 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCA 9473273 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| || || |||||||||||| Sbjct 9473272 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCTTCCTTA 9473213 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || |||||||| ||||| || ||| || || || | || || Sbjct 9473212 TCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 9473153 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| || | ||| || || || |||||||| ||| Sbjct 9473152 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATT 9473114 >seq1 Length=31626230 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||| || || ||||||| || || || ||||| || || || || | Sbjct 27268429 TACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 27268370 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || || ||||| || | || |||||||||| Sbjct 27268369 ACAGAGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAG 27268310 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || || || | Sbjct 27268309 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGA 27268250 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| |||||| || || |||||||| Sbjct 27268249 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||||| || || || ||||| || || || || || Sbjct 27268655 CCCCCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 27268596 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| || || || || || ||||| || | || ||||||||||| Sbjct 27268595 AGAGTGCGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 27268536 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || ||||| || || || || Sbjct 27268535 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 27268476 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| |||||| || || |||||||| Sbjct 27268475 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 >seq112 Length=21277816 Score = 113 bits (124), Expect = 9e-20 Identities = 203/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || |||| ||| |||| || ||| ||| ||||| | | || | |||||| | Sbjct 19215514 CTGGAAACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCAG 19215573 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || |||||||| | ||| | | ||||||||||| || |||||||| || |||||| Sbjct 19215574 GAGGGCAAAATGCACGGCTTTCTGCGGATGTACTGGGCCAAGAAGATACTGGAGTGGACA 19215633 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | |||||| || || || | ||| || | |||||||| ||| || |||| || || Sbjct 19215634 AAAACACCCGACGAAGCGCTCGAGATAGCG-ATCTATCTGAACGATCGGTACAGCCTGGA 19215692 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550 || ||||| ||||| ||||| || || |||||||| || || |||| |||| Sbjct 19215693 TGGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGCATACACGATCA 19215752 Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | ||||| || | || || || || || || || ||||| |||||||| Sbjct 19215753 GGGATGGAAGGAGCGCGAAATTTTCGGCAAAATCAGGTACATGAACTATGAGGG 19215806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818670989842