Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq231 136 6e-26 seq112 123 4e-22 seq586 96.9 5e-14 seq68 87.8 3e-11 >seq231 Length=3502 Score = 136 bits (150), Expect = 6e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| |||||||| || ||| |||| || ||| | Sbjct 2649 ATCTACAAGGTGCTGAAGCAAGTGCACCCGGACAC---TGG--CATC-TCGTCGAAGGCT 2702 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| ||||| || |||| ||||| | | ||||| Sbjct 2703 ATGAGCATCATGAACAGCTTTGTGAACGATATTTTCGAACGCATTGCTGCGGAGGCATCC 2762 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| |||||| ||||||| ||||||||||| || Sbjct 2763 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACATCGCGCGAAATCCAGACCGCTGTC 2822 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || ||| ||| || ||||||| ||||||||| ||||| || || Sbjct 2823 CGTCTGCTCCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAAGGTAC 2872 >seq112 Length=21277816 Score = 123 bits (136), Expect = 4e-22 Identities = 190/267 (71%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||||||||||| || |||||||| ||| | |||| | | | Sbjct 19493929 AGGCGGAAGCTTCCTTTTGGACCGTGGAAGAGGTCGATCTCTCCAAGGACATGAAGGATT 19493870 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| ||||||| ||| ||| || ||||||||| |||||| || ||||| ||| || Sbjct 19493869 GGGAATCGCTGAAAC-CGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTT-GC 19493812 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| |||||| ||||| ||| ||||||| | ||||| | | ||||| || | Sbjct 19493811 CGCATCCGATGGTATCGTTAACGAAAACCTGGTGGAGCGCTTCAGCCAGGAGGTACAGGT 19493752 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | |||||||| | ||||||||||| || || || || ||||| | ||| || | Sbjct 19493751 AACGGAGGCACGCTGCTTTTACGGGTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 19493692 Query 1456035 CTACTCGCTCCTGATCGACACCTACGT 1456061 ||||| || || |||||||| ||||| Sbjct 19493691 GTACTCACTGCTAATCGACACGTACGT 19493665 >seq586 Length=1106 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || || || || || ||| || || || |||| | Sbjct 502 ATCTACAAGGTGTTGAAACAAGTCCATCCGGATACC---GGAATTTCTTC---CAAGGCG 555 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| |||| || Sbjct 556 ATGAGCATCATGAACAGCTTCGTGAACGACATTTTCGAGCGCATCGCTGCCGAAGCATCC 615 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||||| || ||||||||| |||||| | ||||| ||||| || ||||| Sbjct 616 CGCTTGGCGCACTACAACAAGCGTTCGACGATCACGTCCCGCGAAATCCAAACGGCCGTC 675 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| || || |||||| ||||||||| ||||| ||||| Sbjct 676 CGTCTGCTGTTGCCTGGTGAGTTGGCCAAGCACGCCGTGTCCGAAGGCAC 725 >seq68 Length=3930384 Score = 87.8 bits (96), Expect = 3e-11 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTC 724969 ||||||||| ||||| |||||||| |||||| |||| ||| || ||| | Sbjct 2243957 TATCTACAAAGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATT-TCGTCGAAGGC 2243904 Query 724970 CATGTCGATCATGAACTCGTTT-GTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||| |||||||| | |||| || ||||| || |||| || || | | || || Sbjct 2243903 CATGAGCATCATGAA-TAGTTTCGTGAACGATATCTTCGAGCGGATTGCGGCGGAAGCGT 2243845 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || |||| | | |||||||||| ||||||| | || ||||||||||| || | Sbjct 2243844 CCCGGTTGGCCCATTACAACAAGCGCTCCACGATCACGTCCCGGGAGATCCAGACGGCGG 2243785 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | ||| || || ||||| | ||| ||||| |||||||| |||| Sbjct 2243784 TACGGCTACTGTTGCCGGGTGAGCTGGCAAAGCATGCCGTGTCCGAGGGTACCA 2243731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177745805653836