Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq646 122 8e-23 seq112 105 6e-18 >seq1 Length=31626230 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| |||| || || || |||| ||| Sbjct 27268637 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 27268578 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| || || |||| |||||||| || | ||||| || |||||||||| | Sbjct 27268577 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268518 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | |||||| || || ||||||| |||||| || || Sbjct 27268517 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268458 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || |||||||| Sbjct 27268457 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| |||| || || || | || ||| Sbjct 27268409 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27268350 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| || || |||| |||||||| || | ||||| || |||||||||| | Sbjct 27268349 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 27268290 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | |||||| || || ||||||| |||||| || || Sbjct 27268289 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 27268230 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || |||||||| Sbjct 27268229 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27268201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 35487 TTTATACAATCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCT 35546 ||||| |||||| || | | |||||||| | | | |||| ||| | || | Sbjct 15287684 TTTATTAAATCAT---TTAAATGCCACCACGCAGACGAAGGACCAGATGAAGGGTCGATT 15287628 Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| |||||||| ||||| | || || || | || ||||||||||| || || || | Sbjct 15287627 CCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCGAAGA 15287568 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| |||||||| || | || | | |||||||||| ||||| ||| | | Sbjct 15287567 TCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTCT 15287508 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || ||| | |||||||| | |||||||| || || |||| || || || | Sbjct 15287507 CGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAGGGTCTTGACGA 15287448 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 15287447 AGATCTGCAT 15287438 >seq646 Length=9740529 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| ||||||||||| |||| || || || |||| || Sbjct 6802109 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 6802050 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| ||||| |||| |||||||| |||| || | || |||||| ||| Sbjct 6802049 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 6801990 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||| || | || ||||| | || || ||||| Sbjct 6801989 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTTTT 6801930 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 6801929 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 6801900 Score = 109 bits (120), Expect = 5e-19 Identities = 168/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| ||| | ||| ||||| ||||||||||| || Sbjct 9473347 TTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCC 9473288 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || | || ||||||||||| || || || || | |||||||| |||| Sbjct 9473287 GACAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGG 9473228 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | | ||||| ||| ||||||| ||||| | || | | |||||| | || Sbjct 9473227 GGGATTCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 9473168 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC---ATTCTGTG 35742 ||||| | ||||| || || || || | |||||||| || |||||| |||||||| Sbjct 9473167 ACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATTCTGTG 9473109 >seq112 Length=21277816 Score = 105 bits (116), Expect = 6e-18 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || |||||| || || || | |||||||| | ||||| || || ||| Sbjct 19215514 CTGGAAACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCAG 19215573 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || ||||||||| | |||| ||||| ||| |||||||||| |||||||| | Sbjct 19215574 GAGGGCAAAATGCACGGCTTTCTGCGGATGTACTGGGCCAAGAAGATACTGGAGTGGACA 19215633 Query 44223 GAAG-ATGCG-CAAACCGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGG 44280 || | || | || ||||||| || |||||||||||||| |||||| ||| Sbjct 19215634 AAAACACCCGACGAA--GCGCTCGAGATAGCGATCTATCTGAACGATCGGTACAGCCTGG 19215691 Query 44281 ACGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-C 44339 | || ||||| || ||||||||||| || || |||||||| || || | ||||| | Sbjct 19215692 ATGGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGCATACACGATC 19215751 Query 44340 AGGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTA 44389 |||| ||| |||| || | ||||||| | | ||||||||||| Sbjct 19215752 AGGG-ATGGAAGGAGCGCGAAATTTTCGGCAAAATCAGGTACATGAACTA 19215800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789779524240