Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq113 129 7e-25 seq668 89.7 6e-13 >seq113 Length=1764599 Score = 129 bits (142), Expect = 7e-25 Identities = 452/700 (65%), Gaps = 13/700 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| || || || | ||||| || ||||| ||||| || || || Sbjct 1503919 GTAAACGTTCGACGTGTACGGCTCGAAAGACTCATTGTTGCCCAAAATTTGCGCCGTCGA 1503860 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| || || ||||||| || | || ||| || Sbjct 1503859 AGCGGTCGGCATCGGGGCCAACAGTAGCGAATTACGAATGCCGTGCTTTGCGATCTTCTC 1503800 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 || || || |||||| | || | | | |||| | ||||| |||| || | || Sbjct 1503799 TTTCAGCTCAGCCCAGTTCCAAAGATCCG-TCGGTTCCTTCTTCC-ACATCTCGTATTGC 1503742 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 | | |||| | | | ||| || || | || || || | ||||| | | ||| Sbjct 1503741 AAAATGCCTTTGCTCACCGGACTTCCTGCATATGTCTCGTACGGACCTTCCCGTGCTGCC 1503682 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 || || ||||| || ||||| | | | || |||| |||||| || | ||||| | Sbjct 1503681 AACTCGCAGCTAGCTTCCAGCGCCCCATAGTAAATGGATTCAAATATTTGTTGATTCAGC 1503622 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | | || || || || ||| ||||| |||||| ||| |||| || | || Sbjct 1503621 TTTTGTGCCTCTTCGCTTTCGTATGGATAGCGCATCAAAATGAATGCATCGGCCATGCCC 1503562 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAACG 111121 || ||||| | ||| || || || || |||||||| || |||| || | || Sbjct 1503561 TGCACACCGATACCGATGGGCCTATGGCGCATATTGGAGCGCTTT---GCTTCCGGTACC 1503505 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 ||||| | || |||| |||| | ||| ||||| ||||| ||||| | || || Sbjct 1503504 GGATAGTAGTTGATGTCGATGATTTTGTTCAGATTGCGCGTAACGATCTTGGCGACATCC 1503445 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | || || || | || | || | | || | || || || | || || || Sbjct 1503444 TTCAGCTTCGCAAAGTCGTATGTCC---TGTCAGCCTTTACGAACATGTTCAGTGCAATC 1503388 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||| ||||||||| || ||||||| || | ||||| | |||||| || || Sbjct 1503387 GAGGCCAGATTGCAAACCGCAATCTCATCTTTCGACGAATACTCCACAATTTCGGTGCAC 1503328 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 |||||||| | |||||| || || | |||| |||||| || || ||||| |||||| Sbjct 1503327 AAGTTGGAGCACTTAATGGTTCCAACGTTCTGTTGGTTGCTTTTACGATTGCATGCATCC 1503268 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 ||||| ||||| || || ||||| ||| ||| |||| Sbjct 1503267 TTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATT 1503228 >seq668 Length=6225679 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 181779 GTGAAGATATACCTCGTTTGAGAAGCG---TCTTTACCACCCATGAGACGCGTACCAAAT 181835 |||||||| ||||| | || ||| || || |||||| | ||||||||||| || Sbjct 1120236 GTGAAGATGTACCTAG---GACTGGCGCTATCCTTTCCACCCGTCAGACGCGTACCGAAC 1120292 Query 181836 TGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTA 181895 ||||||| || | || || || ||||| || || ||||| | |||||| || Sbjct 1120293 TGACCACCCGGATAGAGCAGATTGATGTTATTGCTTCCGACATAGTTCTGGGCCAAATTG 1120352 Query 181896 ACGATGGT--ATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACAT 181953 ||||| || | | | || ||| ||||||||| ||||| || ||||| || ||||| Sbjct 1120353 ACGATCGTCGAACAG--AGCGACTGTTCACCGTGATGGTAGGCCGACTTCTCTGCAACCG 1120410 Query 181954 ATGCCGCCAACTGTGCCACCTT 181975 || | |||||||| || ||||| Sbjct 1120411 ATCCGGCCAACTGGGCTACCTT 1120432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026677428800