Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq668 107 2e-18 seq24 107 2e-18 seq113 84.2 3e-11 >seq668 Length=6225679 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094 |||||||||||||| | || | ||| ||| || |||||| | |||||||| || || Sbjct 1120236 GTGAAGATGTACCTAG---GACTGGCGCTATCCTTTCCACCCGTCAGACGCGTACCGAAC 1120292 Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154 ||||||| || | || |||||||| || || || | |||| | |||||| ||| Sbjct 1120293 TGACCACCCGGATAGAGCAGATTGATGTTATTGCTTCCGACATAGTTCTGGGCCAAATTG 1120352 Query 179155 ACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATAT 179214 || ||||| ||| || ||||||||||||||| |||||||| || || || || Sbjct 1120353 ACGATCGTCGAACAGAGCGACTGTTCACCGTGATGGTAGGCCGACTTCTCTGCAACCGAT 1120412 Query 179215 GCCGCCAACTGCGCCACCTTCATCTC 179240 | |||||||| || ||||| | ||| Sbjct 1120413 CCGGCCAACTGGGCTACCTTAACCTC 1120438 >seq24 Length=5879236 Score = 107 bits (118), Expect = 2e-18 Identities = 274/411 (67%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 || |||||||| | |||||| ||| || || || || | || || || ||| || Sbjct 3063585 TACCAAGCATCCACGTCGGAGCTGTACGGAAAGGTGGCCGAGACACCGCAGAACGAGAAG 3063526 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 11920 || || ||||||||||| ||| || | | | ||| | | ||| | ||| | || Sbjct 3063525 ACACCGTTCTATCCACGCTCCCCGTACGCCTGTGCCAAGATGTACGGTT-ACTGGATTGT 3063467 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 || || || || ||| | || | | | || || ||| ||| |||||||| || ||||| Sbjct 3063466 GATAAACTATCGCGAAGCGTACGATATGTTCGCCTGCAATGGGATTCTCTTTAATCACGA 3063407 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATCAAACAA 12038 |||||| || || || |||| || ||| || || | ||| | ||| | || | Sbjct 3063406 GTCACCGCGCCGGGGAGAAAATTTTGTCACACGCAAAATAACCCGCTCGGTGGCGAAGAT 3063347 Query 12039 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 ||| | || || ||||| | | || |||| || || | || || | |||||| Sbjct 3063346 ATC--GCTCGGACAGCAGGAGTACCTCGAGCTGGGTAATCTTGATTCCAAGCGTGACTGG 3063289 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 || || ||||| ||||| || ||||| ||||||||| | | || || || || | || Sbjct 3063288 GGCCACGCCAAAGACTACGTCGAAGCGATGTGGCTCATGATGCAGCAGGACAAGCCAGAA 3063229 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 || | || | || || ||||| || |||||||| ||||||| || ||| Sbjct 3063228 GATTTCGTTATTGCCACCGGGGAAACGCACTCCGTGCGGGAGTTTGTAGAG 3063178 >seq113 Length=1764599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || || || || |||||||| || || | ||||||| || | ||||| | |||| Sbjct 1503396 AGTGCAATCGAGGCCAGATTGCAAACCGCAATCTCATCTTTCGACGAATACTCCACAATT 1503337 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TT 118825 || ||||||||||| || | ||||||||| || | ||||| ||| || | ||| | || Sbjct 1503336 TCGGTGCACAAGTTGGAGCACTTAATGGTTCCAACGTTCTGTTGGTT-GCTTTTACGATT 1503278 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 || ||||||||||| ||||| || || ||||| ||| Sbjct 1503277 GCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCC 1503238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429958761680