Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 143 3e-29 seq668 125 8e-24 >seq24 Length=5879236 Score = 143 bits (158), Expect = 3e-29 Identities = 255/364 (70%), Gaps = 11/364 (3%) Strand=Plus/Plus Query 124487 CTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAAT 124546 ||| | |||||| || | | |||||| || || ||| |||| ||||||||||| || | Sbjct 3063178 CTCTACAAACTCCCGCACGGAGTGCGTTTCCCCGGTGGCAATAACGAAATCTTCTGGCTT 3063237 Query 124547 CGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 |||||||| ||| |||||||| |||| ||||||||| | ||||| |||||||| || Sbjct 3063238 GTCCTGCTGCATCATGAGCCACATCGCTTCGACGTAGTCTTTGGCGTGGCCCCAGTCACG 3063297 Query 124607 CTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-TGGCCGTCTTGTTCCA---CTCCGCCA 124662 ||||| ||| || || || ||||||| || || ||| | | | || |||| Sbjct 3063298 CTTGGAATCAAGATTACCCAGCTCGAGGTACTCCTGCTGTC-CGAGCGATATCTTCGCC- 3063355 Query 124663 AACCCA--GTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 ||| | | || || ||||| || ||||| | || || ||| |||||||| || Sbjct 3063356 -ACCGAGCGGGTTATTTTGCGTGTGACAAAATTTTCTCCCCGGCGCGGTGACTCGTGATT 3063414 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 || ||||| ||| | || || ||||| |||||| ||||| |||||| || ||||| Sbjct 3063415 AAAGAGAATCCCATTGCAGGCGAACATATCGTACGCTTCGCGATAGTTTATCACAATCCA 3063474 Query 124781 ATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCAT 124839 || || | | ||||| ||| | | || ||| || || ||||| || || || || | Sbjct 3063475 GTAACCGTACATCTTGGCACA-GGCGTACGGGGAGCGTGGATAGAACGGTGTCTTCTCGT 3063533 Query 124840 TTTG 124843 | || Sbjct 3063534 TCTG 3063537 Score = 118 bits (130), Expect = 1e-21 Identities = 244/359 (68%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 |||||| || | | |||||| || || || ||||| || || || ||||| | ||| Sbjct 3063184 AAACTCCCGCACGGAGTGCGTTTCCCCGGTGGCAATAACGAAATCTTCTGGCTTGTCCTG 3063243 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || | |||||||||||| || |||||||| || | ||||| |||||||| ||||||| Sbjct 3063244 CTGCATCATGAGCCACATCGCTTCGACGTAGTCTTTGGCGTGGCCCCAGTCACGCTTGGA 3063303 Query 159063 ATCCATGTTCCCGAGCTCGATG-ACT-----TTTCCAGACTTTTTCCACTCAGCCAGACC 159116 ||| | || || ||||||| | ||| | ||| | | | || ||| ||| Sbjct 3063304 ATCAAGATTACCCAGCTCGAGGTACTCCTGCTGTCCGAGCGATAT---CTTCGCC--ACC 3063358 Query 159117 GAGC--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAAC 159174 |||| || || ||||| || ||||| | | |||| || || ||||| || ||||| Sbjct 3063359 GAGCGGGTTATTTTGCGTGTGACAAAATTTTCTCCCCGGCGCGGTGACTCGTGATTAAAG 3063418 Query 159175 AGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTAT 159234 ||||| || | || ||||||| | || | ||||| || ||| | |||||||| Sbjct 3063419 AGAATCCCATTGCAGGCGAACATATCGTACGCTTCGCGATAGTTTATCACAATCCAGTAA 3063478 Query 159235 CCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 || | | ||||| | |||| || || ||||| || |||||| ||| || || Sbjct 3063479 CCGTACATCTTGGCACAGGCGTACGGGGAGCGTGGATAGAACGGTGTCTTCTCGTTCTG 3063537 >seq668 Length=6225679 Score = 125 bits (138), Expect = 8e-24 Identities = 270/401 (67%), Gaps = 11/401 (3%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | || | | ||||| | ||| || |||||||||||||| || Sbjct 1120970 CAGCTCCGGCCAGTTCGTATGTATGAAGTTGATCAGCAAACCTTTGATGTGCGATCCATC 1121029 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACC 152857 ||||| |||||||||||||||| ||||| || || ||| | || Sbjct 1121030 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGAAGCGTCTTCAAATCGTCCGT 1121089 Query 152858 CGTAG---ACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 |||| || | | | ||| || |||||||| ||||| | || ||| || ||| | Sbjct 1121090 CGTAAGGTACTTCTTCTTGTACTGCAGCCCGAGAATCTTGATCAGATTGTTAATTTCGGC 1121149 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 ||| || | ||| || || || ||||| ||||| || |||| || || | || Sbjct 1121150 ATTTTCCAAAATCTGCTTGTGTGTCGCTTCCCGCACATTCAGCAGCTTACCGCGCAACGG 1121209 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 |||||||||| | | | ||| || || || | || |||| | ||| | | ||| || Sbjct 1121210 AAACACGCCGTAAGTATCGCGACCAACCACTCCCAACCCGGACACAGCCAACGTTTTGGC 1121269 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 ||| || |||||||||| ||| ||||| |||| | | || | | ||||| ||| Sbjct 1121270 CGAATCTCCCTCGGTGAGAATGAGCGTGCAGTTGAGCGAATTGCGCGACCCGGCATCGTT 1121329 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTG--CTTTT 153131 ||||| || ||||| ||||| ||| | ||| || ||||| Sbjct 1121330 AGCGTCCTCCAGCTTCGGGATACCCTTAATCTTGGACTTTT 1121370 Score = 109 bits (120), Expect = 6e-19 Identities = 294/447 (66%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || || ||||||||||| | |||||| | || || || | Sbjct 1120083 CCCGTACCGATTCCATCAGCCCCGTTGACCAGCAACATCGGAATGATCGGTAAATACCAG 1120142 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||| || | | ||| || |||| | ||| | || | | || || ||| Sbjct 1120143 ACCGGTTCGATACGCTGATTATCGTCCAGCTGGTACTCCAGCAGCGGATCATCCAGCGGG 1120202 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || | || |||| | ||| ||||||||||| | | ||||| | Sbjct 1120203 TGGAAAATACTACGCGTCAGTGCGGACAACATGGTGAAGATGTACCTAGGACTGGCGCTA 1120262 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| ||||| | ||| ||||| || ||||| ||| || | ||| || |||| ||| Sbjct 1120263 TCCTTTCCACCCGTCAGACGCGTACCGAACTGACCACCCGGATAGAGCAGATTGATGTTA 1120322 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT-GCCCTGCAGACTCGCTTCACC 152174 ||| || || | ||||| |||||||| || ||||| | | | || | |||||| Sbjct 1120323 TTGCTTCCGACATAGTTCTGGGCCAAATTGACGATCGTCGAACAG-AGCGACTGTTCACC 1120381 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC-- 152232 ||| || || |||| || ||| || | |||| |||||||| || ||||| | ||| Sbjct 1120382 GTGATGGTAGGCCGACTTCTCTGCAACCGATCCGGCCAACTGGGCTACCTTAACCTCCCG 1120441 Query 152233 ---GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 |||||| | ||||| |||| | | | ||||| | ||| |||||||| Sbjct 1120442 TTTATCGTCACG-----CTTGAAGCAGGTGAACAGAACCTTCCTTTGGCCCGGTTTCAAT 1120496 Query 152290 CCGTCCACCACGTGAGGAATCGAACGC 152316 || |||| || | |||||||||||| Sbjct 1120497 CCATCCAACATGCACGGAATCGAACGC 1120523 Score = 104 bits (114), Expect = 3e-17 Identities = 273/411 (66%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | || || | ||| | || | || ||||| || || || ||| Sbjct 1120971 AGCTCCGGCCAGTTCGTATGTATGAAGTTGATCAGCAAACCTTTGATGTGCGATCCATCC 1121030 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCA----GGGAGT 118091 ||||| ||||||||||||||||| ||||||||| | ||| ||| | || Sbjct 1121031 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGAAGCGTCT-TCAAATCGTCCGT 1121089 Query 118092 TATAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 ||| || | | ||| || |||||||| ||||| | || ||| || ||| | Sbjct 1121090 CGTAAGGTACTTCTTCTTGTACTGCAGCCCGAGAATCTTGATCAGATTGTTAATTTCGGC 1121149 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||||||| | ||| || || || ||||| || || || ||||||| |||| || Sbjct 1121150 ATTTTCCAAAATCTGCTTGTGTGTCGCTTCCCGCACATTCAGCAGCTTACCGCGCAACGG 1121209 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| | | || || || || || | ||| |||| | ||| | | || || Sbjct 1121210 AAACACGCCGTAAGTATCGCGACCAACCACTCCCAACCCGGACACAGCCAACGTTTTGGC 1121269 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 ||| || |||||||| | ||| || ||||| | | | ||| | | ||||| Sbjct 1121270 CGAATCTCCCTCGGTGAGAATGAGCGTGCAGTTGAGCGAATTGC---GCGACCCGGCATC 1121326 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 ||||| || ||||||||||| | ||| |||| |||||||| || || Sbjct 1121327 GTTAGCGTCCTCCAGCTTCGGGATACCCTTAATCTTGGACTTTTTCGAACC 1121377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211362344400