Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq646 105 4e-18 seq1 82.4 5e-11 >seq646 Length=9740529 Score = 105 bits (116), Expect = 4e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||| || || |||||| |||||||| || || | Sbjct 6802128 CGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 6802069 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | ||||| || |||| || || || ||||||||||| || | |||||| || ||||||| Sbjct 6802068 ACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCG 6802009 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||| || |||| || | || || | || || || | ||| Sbjct 6802008 GGATGCCCTCCTTATCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 6801950 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || | ||| || |||||||| || | ||||| || || |||||||| |||| Sbjct 6801949 ACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGA 6801895 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| |||||| || ||||| |||||||| || || || || || || Sbjct 9473335 AGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGA 9473276 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || ||||| || | ||| ||| Sbjct 9473275 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCTTCC 9473216 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || ||||||| || | | || ||||| ||| || || | || Sbjct 9473215 TTATCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 9473156 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | ||||||||| |||||||||||| Sbjct 9473155 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 9473117 >seq1 Length=31626230 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || ||||| |||||||||||||| || || || || Sbjct 15287655 AGACGAAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGG 15287596 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || || || | ||||||| Sbjct 15287595 CCATCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCC 15287536 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | |||||| | || || || |||||| || | ||| Sbjct 15287535 TTGTC-CTGAATCTTGGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGT 15287477 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| || || || | || || || || ||||||||||| Sbjct 15287476 GATCGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATGTT 15287435 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || |||||| || ||||| || || || || || || Sbjct 27268646 AGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 27268587 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || |||||||| || || | |||||| || || || || | |||||| Sbjct 27268586 CCGTCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCCTCC 27268527 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||| || |||| || Sbjct 27268526 TTGTCCTGGATC-TTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGT 27268468 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| ||||| || |||||||| Sbjct 27268467 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 27268429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726999349974