Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq112 154 1e-32 seq1 140 3e-28 seq646 127 2e-24 >seq112 Length=21277816 Score = 154 bits (170), Expect = 1e-32 Identities = 216/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| ||| |||||||| |||| || | |||| | || || |||||||||||| Sbjct 19215529 ACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCAGGAGGGCAAAATGCAC 19215588 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || ||| |||| ||||| ||||| || |||||| |||| ||| | | | || | || Sbjct 19215589 GGCTTTCTGCGGATGTACTGGGCCAAGAAGATACTGGAGTGGACAAAAACACCCGACGAA 19215648 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| | || || | | | || ||| ||||| | ||||| |||||| | || Sbjct 19215649 GCGCTCGAGATAGCGATCTATCTGAACGATCGGTACAGCCTGGATGGGCGCGATCCGAAC 19215708 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| || || |||||||| || || |||||||||| ||||||||||||||| Sbjct 19215709 GGGTACGTCGGGTGCATGTGGTCGATCGCGGGCATACACGATCAGGGATGGAAGGAGCGC 19215768 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 || | || ||||| || | || ||||||||||| || || | | || ||||| || Sbjct 19215769 GAAATTTTCGGCAAAATCAGGTACATGAACTATGAGGGATGCAAGCGTAAGTTTAACGTC 19215828 Query 135761 AAT 135763 ||| Sbjct 19215829 AAT 19215831 >seq1 Length=31626230 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 27268429 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268488 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 27268489 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 27268548 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||||||| | || | ||||| |||||| Sbjct 27268549 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAAC 27268608 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||||| || ||||| | ||| |||| || || Sbjct 27268609 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGGGG 27268655 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 27268201 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 27268260 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 27268261 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 27268320 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | || | ||||| |||||| Sbjct 27268321 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27268380 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| || || || Sbjct 27268381 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 27268430 >seq646 Length=9740529 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 9473117 CATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 9473176 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || ||| || || || || ||||| || || || ||||| Sbjct 9473177 GGACACGATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCA 9473236 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || || | || || ||||| Sbjct 9473237 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCGGACTACAA 9473296 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || ||| | ||| |||| |||| | || ||||| Sbjct 9473297 CATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGG 9473344 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | ||||| ||||| || || || || Sbjct 6801900 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCCTCG 6801959 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || || || || ||||| || || ||||| Sbjct 6801960 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 6802019 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || |||| ||| || || | ||||| |||||| Sbjct 6802020 CAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTACAAC 6802079 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||||| | ||| |||| | || |||| |||||| Sbjct 6802080 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGC 6802127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914714066560