Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20minimus_20[genbank_20GCA_5F000349025.1_202013-03-28] 678 sequences; 201,793,324 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq646 93.3 4e-14 seq1 86.0 5e-12 >seq646 Length=9740529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || || || || |||| ||||| || | Sbjct 6802115 GCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACC 6802056 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || ||||| || ||||||||||| || | || | || ||| || Sbjct 6802055 GTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTT 6801996 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| || | || | | |||||| | ||| || || | || || Sbjct 6801995 ATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAAT 6801936 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| || ||||| || ||||| |||||||| Sbjct 6801935 GGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 6801897 >seq1 Length=31626230 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| || || ||| |||| || ||||| || || || || Sbjct 27268620 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTACCGGCGAA 27268561 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||| || | || | || ||| |||||| ||| || || | | Sbjct 27268560 GATCAGACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 27268501 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| || || ||| || |||| |||||| | || || |||||||| || || Sbjct 27268500 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 27268441 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 27268440 GAAGATCTGCAT 27268429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || || || || || || |||||||| | || || || | || || Sbjct 15287646 ACCAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCCGACAGAGTGCGGCCATCCTCC 15287587 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || |||||| | | ||| |||||| | Sbjct 15287586 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCTGGTGGG-ATTCCCTCCTTGTCC-T 15287529 Query 39195 GATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | || || | | |||||| | |||||| || | ||||| | | Sbjct 15287528 GAATCTTGGCCTTAACGTTCTCGATGGTATCGGAAGGCTCCACCTCAAGGGTGATCGTCT 15287469 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 |||| ||||| || || || ||||| ||||| || |||| Sbjct 15287468 TTCCAGTCAGGGTCTTGACGAAGATCTGCATGTTAACGC 15287430 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAG-CGTAACACCAAATGTAGCGT-GCTCTCTTTTTGTATATTATAA 39111 || ||| || |||||| || | ||||| ||| | ||| | || | | || ||||| ||| Sbjct 15285024 CATGCCACC-CTTAAGTCGGAGCACCAGATGCATCGTTGATC-CGTGCTGGATATTGTAA 15284967 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 || | | | || | ||||| | ||||||||| ||||| |||| ||||||||||||| Sbjct 15284966 TCAGATATGATCCGACCCTCATCCAACTGTTTGCCGGCAAAGATAATACGCTGCTGGTCG 15284907 Query 39172 GTGGGCA---CGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 | | ||| | ||| | || |||||||||| | ||||| | ||||| || | Sbjct 15284906 G-GTGCAATACCCTCGCGTT--CCATGATTTTATTTTTGATGTCCAAAACCGTCTC-CGA 15284851 Query 39229 GACTCCA-CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || | || | ||||| |||| ||||| | |||||| |||||||| ||||| Sbjct 15284850 GGCGACAGCATCAAGGGTGATCGTTTTACCCGTTAACGTTTTTACAAAGATCTGCAT 15284794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542050611014