Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3179 104 5e-17 seq17000 91.5 3e-13 seq9847 91.5 3e-13 seq47254 89.7 1e-12 seq34383 89.7 1e-12 seq13924 89.7 1e-12 seq8203 89.7 1e-12 seq3191 89.7 1e-12 >seq3179 Length=6791 Score = 104 bits (114), Expect = 5e-17 Identities = 301/456 (66%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 281571 GGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGG 281630 ||||| ||||| | |||||| || || ||||| | ||||||| || | | || Sbjct 3519 GGAATCTTAGTCGCCCAACCAGTACCGATACCTTCCGCTCCATTTATCAGCAGCATTGGT 3578 Query 281631 ATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGA 281690 ||||| || | || || | |||||||| | | || || | | ||||| ||| Sbjct 3579 ATAATTGGCAAGTACCAAACGGGTTCAATGCGCTGATTGTCCTCGTTCTGATACTCCAGC 3638 Query 281691 AGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATA 281750 || ||| || | ||||| || |||||| || | || |||||||||| Sbjct 3639 AGTGGATCGTCGAGCGGGTGGAAAATGTGGCGCGTCAGAGCGGACATCATCGTGAAGATG 3698 Query 281751 TACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGC 281810 ||||| | || ||| |||||| || ||| || | | ||||||||||| |||| Sbjct 3699 TACCTCGGGCTAGCGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTGACCACCCGG- 3757 Query 281811 AACAACCAG-TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCC 281869 | || ||| |||||||| ||||| ||||| || | ||| |||| |||| ||| ||| Sbjct 3758 ATAAAGCAGATTAATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGATGATCGTCGA 3817 Query 281870 CTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTG 281929 || || | ||||||||||||||||||| || || || |||| | ||| Sbjct 3818 GCACAGGGACATCTCACCGTGGTGATAGGCGGACATCTCCGCGACTGAACCGGACAGCTG 3877 Query 281930 TGCTACCTTCACGT--CTGATGTCAAGTTGCGTTTGAAAGCGC-AATATAATACTTTTCG 281986 || |||||||| | | |||| ||| || ||| |||| | | | |||||||| || Sbjct 3878 AGCCACCTTCACCTCGCGCTTGTC--GTTACGCTTG-AAGCACGTAAACAATACTTTCCG 3934 Query 281987 TTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 ||| ||||| || || || | ||| |||| || Sbjct 3935 CTGACCGGGCTTCAAGCCGTCTAACACACACGGGAT 3970 >seq17000 Length=2756 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2676 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2735 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2736 CCCCACGTTGGGC 2748 >seq9847 Length=4602 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2304 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2363 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2364 CCCCACGTTGGGC 2376 >seq47254 Length=1109 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1034 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 975 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 974 CCCACGTTGGGC 963 >seq34383 Length=3954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1252 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1193 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1192 CCCACGTTGGGC 1181 >seq13924 Length=3127 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2951 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2892 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2891 CCCACGTTGGGC 2880 >seq8203 Length=2425 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1209 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1150 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1149 CCCACGTTGGGC 1138 >seq3191 Length=5702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 4319 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4260 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4259 CCCACGTTGGGC 4248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057132127568240