Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2949 114 1e-20 seq38620 84.2 2e-11 >seq2949 Length=10021 Score = 114 bits (126), Expect = 1e-20 Identities = 188/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTG 118988 ||| | ||||||||||| ||||||||||||| ||||| ||||| || ||| || || Sbjct 8959 TCGTAGTTCATGTATCGAATCTTTCCAAATATATCGCGCTCTTTCCA-GCCCTGATCATG 9017 Query 118989 GAGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACT 119047 || || || | | ||| | ||| || ||||| ||||| ||||| ||| || | ||| Sbjct 9018 GATACCCGCGATCGACCACATACAGCCAACGTACCCGTTTGGATCGCGTCCATCGAGACT 9077 Query 119048 CGTACTTATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCAT 119106 |||| ||||| | ||||| | || | | ||| ||| || || || ||||| Sbjct 9078 -GTACCGGTCGTTCAGATAGATGGCTGATTCG-AGCGCCTCTTCAGGCGTTTTGGTCCAT 9135 Query 119107 TCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATC 119166 || || ||||| || ||||||||||| || | | ||||||||||| || || || | | Sbjct 9136 TCGAGGATTTTCTTCGCCCAGTACATTCGCAGGAAGCCGTGCATTTTGCCTTCCTTTACC 9195 Query 119167 ATCTGAAGTTGTGCGGTGTTCCA 119189 ||||| || || || | |||||| Sbjct 9196 ATCTGTAGCTGAGCCGAGTTCCA 9218 >seq38620 Length=1898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||| ||| ||||| ||||| || |||||||| || ||||||||||| | ||| || Sbjct 20 AGGTATTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGC 79 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC- 16302 ||||| || || || | |||||||| || || ||||| | |||||| || || || Sbjct 80 TCGTTCGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCA 139 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAAC 16332 ||| ||| | ||| || |||||||| || Sbjct 140 AAACTACCGCTGAAA-AAGATACCCTCCAC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511088066471360