Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1636 488 6e-133 seq38620 125 8e-24 >seq1636 Length=7642 Score = 488 bits (540), Expect = 6e-133 Identities = 1251/1888 (66%), Gaps = 40/1888 (2%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGAT---GCGGGTTTCGTACGTAGATAGTACATT 52855 ||||||| ||||| ||||||| || | || || || ||||| | |||||||| Sbjct 5995 TTGTCCACCGTGAACTGAATGG---CGTTTACCGCCGGCTTGGTACGCAAGTAGTACATG 5939 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 |||||||| || || | |||| ||||| ||||| || ||| || ||| |||| || Sbjct 5938 CCCGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCATAATTC 5879 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 || || || | || || || | || || |||||| || || ||||| | ||| || Sbjct 5878 GGTTCAGCCACGTGAATGTTGAACGACTGTGATTGATCTATAAACGCTCCTCGGTCGGCG 5819 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAAT 53034 ||||| || ||| || ||| || || ||||| | ||||| |||| || | ||| Sbjct 5818 GCCATCTTGATGGAAGTTTTTACTGATATCTCCCAGACCGTTTTGTAAATGTCACG-AAT 5760 Query 53035 ATCTTCTGGAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTT 53091 |||| |||| | ||| ||||| || ||||| | ||| ||| | | | Sbjct 5759 CTCTTGGGGAATTTCCGTAATTTTCTGGATCGATCCGTTGTGCGCCAGAATTCGGTGTCT 5700 Query 53092 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 53151 || ||||| | ||| || | ||| || || | | |||||||| |||| || || Sbjct 5699 CATATCATCGTCCCACAAGCCACACTCCGTCAAGTCCTTCAGGAGATGGTGATTCACCAC 5640 Query 53152 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 |||||||||||| |||| || | || | | |||| || || |||||||| | || Sbjct 5639 TTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTTCGAAGGA 5580 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 |||||| || ||||||||||| || ||||| || |||||||| ||||||| || || | Sbjct 5579 CTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACAGTAGAGA 5520 Query 53272 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||| | || || ||| | | || || ||||| | |||| ||||| || ||| Sbjct 5519 ATTGCGAATGCC--ATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCACAGGTCC 5462 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 53388 | ||| || | ||||| || || | | | | ||| | Sbjct 5461 GTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCTA-CCTTC 5403 Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 || || ||||||||||| || |||| | || || || ||||| || |||||||| Sbjct 5402 GTACGTCTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCCTCCAAGGCACCGTA 5343 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 || || ||||| || || | || ||| || | ||| || ||| || || |||| || Sbjct 5342 GTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGTATGGGTA 5283 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | || |||||||| || || | ||||| |||||||||||||| || || || | Sbjct 5282 TCGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCTGTGGCG 5223 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 | | || || || || |||| ||||| || || || || || ||||| || | Sbjct 5222 CATGTTCGAACGACGCGCCTCCGGAACCGGATAGTAGTTGATGTCGATGATTTTGTTCAA 5163 Query 53629 GTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC 53685 ||||| | || | ||| | | ||||| ||||||||| |||||| | | ||| Sbjct 5162 GTTTCGCGTTACGGT--CTTAG-CGACATCTTTCAGTTTGCCAAAATCGTACGTACGATC 5106 Query 53686 ---TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 | | ||||||||||| || || || ||||| ||||| || ||||| | ||| | | Sbjct 5105 CGATCTCACAAACATGTTTAACGCGATCGATGCAAGATTGCACACGGCAATCTCGT---C 5049 Query 53743 ATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | || | | ||||| |||||||| || ||||| || || || | || Sbjct 5048 CTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTATTGTGCCCACGTT 4989 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 ||| || || |||||| ||||||||||||||| || || ||| | ||| || ||||| Sbjct 4988 TTGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTACAGCATGTACGGCACGCCGGTTTC 4929 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA-TTATAGATTTGTATC 53918 | ||| ||||| || || || ||| | | | | ||||||| || || | Sbjct 4928 CACCTGTGATTCAATTATGGCAAACCACAGGTCCTGCGCCTTTACTTGGCGAATAAAGCG 4869 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 | || || | ||||| ||| | || ||||| || ||||| || || Sbjct 4868 ACCTTCCT-TCTCGTAGCCCTCGTACCGTTTCTCGAACTCTTCGCCCCACGAATCAGACA 4810 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 |||| || || |||| ||| ||||| | |||| | ||| | ||| |||||| |||| Sbjct 4809 ATCCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCCTCCACTCGCTTCA 4750 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGT 54095 | || | ||| || |||||||| || ||| | | || ||| | | | || ||||| | Sbjct 4749 TGAATAAATCCGGTATCCAAAGGGC-ATAGA-ACATGTCTCGCGC-ACGTACCTCCTCCT 4693 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | ||||| |||||||| |||||||| ||| | | | |||| |||||||| |||| || Sbjct 4692 TCCCTGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCCACGGCTCCAGGT 4633 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | || | | |||| || || || || ||||| ||||| | ||| | || ||||||| Sbjct 4632 AGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCGCGCCGTGTTAT 4573 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | || || | | ||| || | | ||||||||| ||||| || || | ||| || Sbjct 4572 TGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCCCGCGATGTACG 4513 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 |||| | ||||| ||| | | || || || || || || || || || | Sbjct 4512 TTCCCTTCGCACGGATACAATGCACGTTCAGCCCAATGCCACCGGCTGACTTTGATATCA 4453 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| |||| | |||||| ||||| || || || || || || ||| | | | Sbjct 4452 GGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGACATCGTCAACA 4393 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || ||| ||| | || |||| || ||||| ||| | || |||||||| | Sbjct 4392 GGAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCCGCAGCAAACATAGTTGGAGAAGCAT 4333 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || || || || || || ||||||||||||||||| || | || |||||| Sbjct 4332 GGGTGAAAAATCGCTCCGACAGCAGATTGTACGTCTCGATGGCCGCATCGATATCCTCGC 4273 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||||| || | || || ||||| | ||| ||||| || | ||| ||||||||| | Sbjct 4272 CGTGAATACCGATGGCAACGCGCATCAGCATATGCTGGGGACGTTCGACGATCTTGCCCT 4213 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | ||||| |||| ||||||| |||||||||||||| || ||||| || || ||||| Sbjct 4212 TAATTTTGAGCAGGTAGGATCGCTCCAAAGTTTTAAAGCCGAAATAATTATAGCCAAAGT 4153 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAG 54663 | || ||||||||||| | || ||||| Sbjct 4152 CGCGATCGTAAATAATGGCCGAATTGAG 4125 >seq38620 Length=1898 Score = 125 bits (138), Expect = 8e-24 Identities = 184/258 (71%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 24122 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 24181 ||| ||||| | ||| || || |||||||| || || ||||| | || | ||||| Sbjct 25 TTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTT 84 Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 || ||||||||||| ||||| | ||| ||||| |||||||| || |||| |||||| Sbjct 85 CGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACT 144 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 || || || || || || || || || ||||||| || | ||| ||| | ||| Sbjct 145 ACCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGC 204 Query 24302 --GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 || | || ||||| || |||||||||||||||||||||| || || || | || Sbjct 205 CTTCTTGCTTGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTAGCGT 264 Query 24359 CTCTATAGCATTAAAGAG 24376 ||| || || ||||| || Sbjct 265 CTCGATCGCGTTAAACAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593342746247040