Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq38620 197 1e-45 seq20012 118 1e-21 seq50967 114 1e-20 seq42053 96.9 4e-15 seq3519 89.7 5e-13 >seq38620 Length=1898 Score = 197 bits (218), Expect = 1e-45 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| ||||||||| | |||||||| ||| |||||||||| ||||| ||| || Sbjct 281 TGTTTAACGCGATCGAGACGCTACCGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAACT 222 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| || || || | || |||||||| ||||| |||| Sbjct 221 GGATCTCAAGCAAGAAGGCCAACTTTGGTGAACGGGTTGTTGCCTTCGCTGCCGTGGAGG 162 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | |||| || || ||||| || ||||| || ||||| ||||| |||||| | |||| Sbjct 161 GTATCTTTTTCAGCGGTAGTTTTGCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGATGC 102 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| ||||| | ||||| || ||||| |||||||||| Sbjct 101 CAGGACTCACGTTCTCGAACGAGCTGATCTCGCGCGACGAAGGACTGCACTGCGACTTTG 42 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAG 117214 ||||| | ||||||| | |||||||| Sbjct 41 CCTGTCTCATGTTCAAATACCTGGTGCAG 13 Score = 190 bits (210), Expect = 2e-43 Identities = 210/280 (75%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || ||||||||||| || |||||||| || || ||||||| || |||| Sbjct 649 AGGCTGAAGCATCCTTCTGGACCGTGGAAGAGGTGGATCTCTCGAAGGACATGAAGGACT 590 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 |||| ||||| | |||||| || |||||| ||||||||| || || || |||| Sbjct 589 GGGAATCGTTGAAGCCGAGCGAGCGTCACTTCATCTCGCACGTGCTCGCATTCTTTGCCG 530 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || |||||||| |||||||| ||||| ||||| ||| |||||||||||||| Sbjct 529 CTTCGGATGGCATCGTAAACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGGTTA 470 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || ||||||||||| || ||| |||| ||||| ||||| ||| ||||||| Sbjct 469 CGGAAGCCCGCTGCTTCTACGGTTTCCAGGTCGCGATGGAAAACGTCCACAGTGAAATGT 410 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 | || || ||||| ||||| | ||| ||| |||| Sbjct 409 ACTCACTGCTGATCGATACGTATATTCGCGATTCAAAGGA 370 >seq20012 Length=3655 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||||||||| || || ||||| || |||| ||||| Sbjct 2717 GAAAGATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGC 2658 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | |||| | | ||| | |||| ||| || | || ||||| || || || | | Sbjct 2657 CCTCTGACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAG 2598 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| |||||||||||||| || | || || | |||| Sbjct 2597 ATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACT 2538 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || || |||||||| | || || || || |||||||| Sbjct 2537 ATAATATTCAGAAGGAATCTACCCTTCACCTGGTGTTGCG 2498 >seq50967 Length=297 Score = 114 bits (126), Expect = 1e-20 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-CCGACAGCGT 40757 ||||| ||||| || || |||||||| ||||| |||| || || |||| |||| | | Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGA-GCCATCCGATACGAT 239 Query 40758 GCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 | |||| |||||| ||| |||| || ||||| || ||||| | || || || || | Sbjct 238 CGAGAACG-TCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTC 180 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | |||| ||| || || |||||||| || | |||||| | || ||||||||||||| Sbjct 179 TTATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGA 120 Query 40877 AGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || | || |||||| | |||||||| || | || ||| Sbjct 119 AAGAATCGACTCTGCATTTGGTGTTGCGTCTGCGAGGAGGC 79 >seq42053 Length=1259 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| ||| | Sbjct 1009 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCTTC 1067 Query 40750 G---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | || | || | | || | || || | ||||| || ||||| ||| | || Sbjct 1068 GGATACTATCGAG--AATG-TGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 1124 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || | |||| ||| ||||| ||||| || |||| |||||||| |||||| Sbjct 1125 TCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGACTA 1184 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||||||| | || |||| Sbjct 1185 CAACATTCAGAAGGAGTCGACCTTGCA 1211 >seq3519 Length=1813 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| ||| |||| || || || || ||||| | || || || || || || Sbjct 1773 AACG-TCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCGCCAGATCAACAGCGTCTTAT 1715 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| || || |||||||| || | |||||| | || |||||||||||||| || Sbjct 1714 CTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGA 1655 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || |||||| | |||||||| ||| | || || Sbjct 1654 ATCGACTCTGCATTTGGTGTTGCGTTTGCGAGGAGG 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514890438628480