Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq50967 104 4e-17 seq2949 98.7 1e-15 seq20012 89.7 8e-13 >seq50967 Length=297 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 || || || || |||||||| || ||| | ||| | || || ||||| || || Sbjct 291 AAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAAC 232 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | || || ||||| ||||||||||| || || || |||||||| | ||||| || Sbjct 231 GTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTTC 172 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || ||||| || | || ||| |||| || || ||||| || || || |||||||| Sbjct 171 GCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATCG 112 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||||| || ||| | ||||| || || Sbjct 111 ACTCTGCATTTGGTGTTGCGTCTGCGAGGAGGCAT 77 >seq2949 Length=10021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 212/319 (66%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 202756 ATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATAT 202815 || ||||| ||||| | | | || ||||| || |||| |||| ||| || |||||||| Sbjct 8931 ATTAACATTGAATTTTCTTTTGCAGCCTTCGTAGTTCATGTATCGAATCTTTCCAAATAT 8990 Query 202816 TGGTCTTTCTTTCCATGCTCT-ATCATGAATACCACAAATTGACCACATACATCCAACAT 202874 | |||||||| || || |||||| ||||| || ||||||||||| ||||| | Sbjct 8991 ATCGCGCTCTTTCCA-GCCCTGATCATGGATACCCGCGATCGACCACATACAGCCAACGT 9049 Query 202875 ATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNA 202934 | || |||||||| |||||||| | | || || || | || | Sbjct 9050 ACCCGTTTGGATCGCGTCCATCGAGACTGTACCGGTCGTTCAGATAGATGGCTGATTCGA 9109 Query 202935 ATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAAT 202994 || ||||| || | ||| |||||||| | ||||| || ||||| ||||||| | Sbjct 9110 GCGCCTCTTCAGGCGTTTTGGTCCATTCGAGGATTTTCTTCGCCCAGTACATTCGCAGGA 9169 Query 202995 ATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCAT 203054 | || |||||||| || | | | ||| ||| || | | ||||| || | ||| | Sbjct 9170 AGCCGTGCATTTTGCCTTCCTTTACCATCTGTAGCTGAGCCGAGTTCCACAAGTCGTCGT 9229 Query 203055 GAGTTAATGCATTTTCAAG 203073 | ||| || ||||||| Sbjct 9230 GTGTTTTGGCCGTTTCAAG 9248 >seq20012 Length=3655 Score = 89.7 bits (98), Expect = 8e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || || || |||||| | ||| | || | | Sbjct 2712 ATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCCTCT 2653 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || |||||||||||||| ||||| ||||| Sbjct 2652 GACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAG 2593 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || ||||| | |||||| |||| || || || |||||| Sbjct 2592 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACTATAAT 2533 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 ||||| || ||||| || | || |||| || || | || ||||||| Sbjct 2532 ATTCAGAAGGAATCTACCCTTCACCTGGTGTTGCGACTTCGTGGTGGTA 2484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754973943526400