Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq47782 109 6e-19 seq17875 100 3e-16 seq7860 98.7 1e-15 seq40584 96.9 4e-15 seq36132 95.1 1e-14 seq50967 91.5 2e-13 seq3519 87.8 2e-12 >seq47782 Length=2481 Score = 109 bits (120), Expect = 6e-19 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 374 AAATCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 315 Query 60119 ACCACTATACTACCGAGGATTGAATATATAACTTGAATATTACA 60162 |||||||||||| |||||| || || ||| ||||| ||||| Sbjct 314 ACCACTATACTATCGAGGA---CATGTAAAACCTGAATGTTACA 274 >seq17875 Length=5618 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||||| ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1467 AAAACTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1408 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 1407 CTGACCACTATACTATCGAGGA 1386 >seq7860 Length=3702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 60056 GAAAAATTTT----CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 ||| |||||| |||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 2627 GAACAATTTTAGTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 2686 Query 60112 CATACTCACCACTATACTACCGAGGATTGAATATA 60146 ||||| |||||||||||| |||||| | | |||| Sbjct 2687 GATACTGACCACTATACTATCGAGGACTTAGTATA 2721 >seq40584 Length=798 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 62 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 121 Query 60123 CTATACTACCGAGGA-TTGA-ATAT 60145 |||||||| |||||| |||| |||| Sbjct 122 CTATACTATCGAGGACTTGAGATAT 146 >seq36132 Length=822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 704 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 645 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 644 TACTATCGAGGA 633 >seq50967 Length=297 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||||||||||||||||| || || || || || |||||||| | | Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| || || ||||| || || | ||| Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || || ||| ||| | |||| |||| || | | ||| ||| | ||||| Sbjct 200 ATTCCTTCTTTATCC-TGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCAC 258 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174 |||| ||||| |||||||| || || || || || || Sbjct 259 CTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| ||||||||||||||||||| || || || || || |||||||| | Sbjct 1618 TCCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 1677 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| || ||||| || || ||||| || || | ||| Sbjct 1678 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 1737 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||| ||| ||| | |||| |||| || | | ||| ||| | |||| Sbjct 1738 GATTCCTTCCTTATCC-TGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCA 1796 Query 43135 CATCGACCGTGATGGTT 43151 | |||| ||||| ||| Sbjct 1797 CCTCGAGAGTGATCGTT 1813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571452723189440