Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq20012 93.3 3e-14 seq50967 87.8 1e-12 >seq20012 Length=3655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| ||||||| || | || ||||| || | ||| || || ||| Sbjct 2486 CCACCACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGAC 2545 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||| ||||||||||| || |||| ||||| ||||| | || Sbjct 2546 AACGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 2605 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | | | ||||| | |||||| Sbjct 2606 ATACCTTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACC 2665 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCT 43114 || | ||||| || || || || || ||||| || ||||| ||||| ||||| Sbjct 2666 TCGAGAGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCATCTTTCT 2718 >seq50967 Length=297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| ||||| | ||||||||||| | ||| || || || | |||||||| || Sbjct 79 GCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 138 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || |||| || || ||||| || || | ||||||||||| | ||| Sbjct 139 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 198 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || ||| ||| | ||||| | | | || ||| | ||| | Sbjct 199 GATTCCTTCTTTATC-CTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCA 257 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAA 43100 | || | || || ||||| ||||| |||||||| || || Sbjct 258 CCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381132331856784