Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1636 452 5e-122 seq38620 122 1e-22 >seq1636 Length=7642 Score = 452 bits (500), Expect = 5e-122 Identities = 1239/1886 (66%), Gaps = 36/1886 (2%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| || |||||||||| || | || ||||| | ||||||||||| Sbjct 5995 TTGTCCACCGTGAACTGAATGGCGTTTACCGCCGGCTTGGTACGCAAGTAGTACATGCCC 5936 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || | |||| ||||| ||||| || || || ||| ||| | || Sbjct 5935 GTTTTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCATAATTCGGT 5876 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || || | |||||| || | |||||| |||||| || || ||||| | ||| || ||| Sbjct 5875 TCAGCCACGTGAATGTTGAACGACTGTGATTGATCTATAAACGCTCCTCGGTCGGCGGCC 5816 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 || || ||| || ||| || || ||||| | ||||| |||| || | ||| || Sbjct 5815 ATCTTGATGGAAGTTTTTACTGATATCTCCCAGACCGTTTTGTAAATGTCACG-AATCTC 5757 Query 71031 TTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || |||| | ||| ||||| || ||||| | || | ||| | | | | || Sbjct 5756 TTGGGGAATTTCCGTAATTTTCTGGATCGATCCGTTGTGCGCCAGAATTCGGTGTCTCAT 5697 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || || | ||| || | ||| || || | | |||||||| |||| || ||||| Sbjct 5696 ATCATCGTCCCACAAGCCACACTCCGTCAAGTCCTTCAGGAGATGGTGATTCACCACTTG 5637 Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 ||||||||| |||| || | | | | |||| || || |||||||| | ||||| Sbjct 5636 AAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTTCGAAGGACTC 5577 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 ||| || ||||||||||| || ||||| || |||||||| ||||||| || |||| ||| Sbjct 5576 ATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACAGTAGAGAATT 5517 Query 71268 TCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCC---CAATTCCAAAGATCC 71322 | || ||||| | || || || ||||| | ||||| || ||||| || ||| Sbjct 5516 GCGAATGCCATGC--TTGGCAATCTTCTCTTTCA---ATTCCGCCCAGTTCCACAGGTCC 5462 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGC 71381 | ||| || || || || | || | ||| | Sbjct 5461 GTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCTA-CCTTC 5403 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441 || || ||||||||||| || | || | || || || ||||| || || || || Sbjct 5402 GTACGTCTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCCTCCAAGGCACCGTA 5343 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATA 71501 || || ||||| || || | || |||||| | ||| || ||| || || |||| || Sbjct 5342 GTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGTATGGGTA 5283 Query 71502 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | || |||||||| || || | ||||| || ||||||||||| || ||||| | Sbjct 5282 TCGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCTGTGGCG 5223 Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 | | || ||| || || |||| ||||| || || || || || ||||| || | Sbjct 5222 CATGTTCGAACGACGCGCCTCCGGAACCGGATAGTAGTTGATGTCGATGATTTTGTTCAA 5163 Query 71622 ATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC 71678 |||| | || | ||| | | ||||| || |||||| |||||| | | | ||| Sbjct 5162 GTTTCGCGTTACGGT--CTTAG-CGACATCTTTCAGTTTGCCAAAATCGTACGTACGATC 5106 Query 71679 ---TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 | | ||||||| ||| || || | ||||| ||||| || ||||| | ||| | | Sbjct 5105 CGATCTCACAAACATGTTTAACGCGATCGATGCAAGATTGCACACGGCAATCTCGTC--C 5048 Query 71736 ATCG--GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793 | | | || | | || || |||||||| || ||||| || || || | ||| Sbjct 5047 TTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTATTGTGCCCACGTTT 4988 Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853 || || || |||||| ||||||||||||||| || || || |||| || ||||| Sbjct 4987 TGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTACAGCATGTACGGCACGCCGGTTTCC 4928 Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 | ||| ||||| || || || ||| | | | | ||||||| | | | | Sbjct 4927 ACCTGTGATTCAATTATGGCAAACCACAGGTCCTGCGCCTTTACTTGGCGAATAAAGCGA 4868 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 ||| | ||||| || | |||||||| || ||||| | || ||| Sbjct 4867 CCTTCCTTCTCGTAGCCCTCGTACCGTTTCTCGAACTCTTCGCCCCACGAATCAGACAAT 4808 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || |||| ||| ||||| | |||| | | | | | | ||||| ||||| Sbjct 4807 CCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCCTCCACTCGCTTCATG 4748 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || | ||| || |||||||| || ||| || | |||| | | |||||| || || Sbjct 4747 AATAAATCCGGTATCCAAAGGGC-ATAGAACATGTCTCGCGCACGTACCTCCTCCTTCCC 4689 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||| |||||||| |||||||| ||| | | | |||| |||||||| |||| ||| || Sbjct 4688 TGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCCACGGCTCCAGGTAGAT 4629 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | |||| || || || || ||||| ||||| | ||| | || |||||||| || Sbjct 4628 TGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCGCGCCGTGTTATTGTA 4569 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | | ||| || | | ||||||||| ||||| || || | ||| || |||| Sbjct 4568 CACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCCCGCGATGTACGTTCC 4509 Query 72273 ACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | ||||| ||| ||| || | | || || || || || || || || | Sbjct 4508 CTTCGCACGGATACAATGCACGTTCA--GCCCAATGCCACCGGCTGACTTTGATATCAGG 4451 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 ||||| |||| | |||||| ||||| || || || || || || ||| | | || Sbjct 4450 GCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGACATCGTCAACAGG 4391 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || ||| ||| | || |||| || ||||| ||| | || |||||||| || Sbjct 4390 AAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCCGCAGCAAACATAGTTGGAGAAGCATGG 4331 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 || || || || ||||| |||||||||||||| || || | || |||||| Sbjct 4330 GTGAAAAATCGCTCCGACAGCAGATTGTACGTCTCGATGGCCGCATCGATATCCTCGCCG 4271 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || || || | || || ||||| | ||||||||| || | ||| ||||||||| || Sbjct 4270 TGAATACCGATGGCAACGCGCATCAGCATATGCTGGGGACGTTCGACGATCTTGCCCTTA 4211 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 ||||| | || ||||||| |||||||||||||| || ||||| || || |||||| Sbjct 4210 ATTTTGAGCAGGTAGGATCGCTCCAAAGTTTTAAAGCCGAAATAATTATAGCCAAAGTCG 4151 Query 72631 CGTTCGTAAATAATAACCGAATTGAG 72656 || ||||||||||| |||||||||| Sbjct 4150 CGATCGTAAATAATGGCCGAATTGAG 4125 >seq38620 Length=1898 Score = 122 bits (134), Expect = 1e-22 Identities = 183/258 (71%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 ||| ||||| | ||| || || ||||||||||| || || || | || | ||||| Sbjct 25 TTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTT 84 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 || ||||||||||| ||||| | ||| ||||| |||||||| || || | |||||| Sbjct 85 CGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACT 144 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 || || ||||| || || || || || ||||||| || | || ||| | ||| Sbjct 145 ACCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGC 204 Query 42232 --ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 || | || ||||| || |||||||||||||||||||||| || || || | ||| Sbjct 205 CTTCTTGCTTGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTAGCGT 264 Query 42289 TTCTATGGCATTAAAGAG 42306 || || || ||||| || Sbjct 265 CTCGATCGCGTTAAACAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670710946076480