Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq50967 107 2e-18 seq1636 100 3e-16 seq38620 96.9 4e-15 seq3519 84.2 2e-11 >seq50967 Length=297 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 79 GCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 138 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || || || |||| ||||| || ||||| || || Sbjct 139 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 198 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||| ||| || | | || | ||| || | || || || Sbjct 199 GATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCAC 258 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | ||| | ||| |||||||||| ||||| ||||| Sbjct 259 CTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq1636 Length=7642 Score = 100 bits (110), Expect = 3e-16 Identities = 289/437 (66%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAACGG 156552 || || ||||||||||| ||||||| || || || | | | || |||| | ||| Sbjct 5647 TTCACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTA-CGG 5589 Query 156553 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 156612 ||| || ||||| |||||| | ||||||||||| | ||||||||||| |||| Sbjct 5588 TTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAA 5529 Query 156613 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCA 156672 || | ||||| || | || | || || || |||||| | | ||||| ||| Sbjct 5528 CAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCA 5469 Query 156673 TAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCT 156732 | || ||| | | ||||||| |||||| ||||| || || | ||| | ||| Sbjct 5468 CAGGTCCGTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCT 5409 Query 156733 ACCGGCAAACGTGCTATAAGGCTCACTAAC-AGATGCCAGTTCGTAACTGGCCTCGAGCG 156791 ||| | |||| || | | || | || | |||| ||| | || ||||| | | Sbjct 5408 ACCTTCGTACGT-CTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCCTCCAAGG 5350 Query 156792 CAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGT 156851 || | | || | |||||| ||||| | ||| | | ||| | || ||| ||| Sbjct 5349 CACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGT 5290 Query 156852 A-CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGA 156910 | ||||| |||| || | ||| |||||||||| |||||| | ||||| |||||||| Sbjct 5289 ATGGGTAT-CGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGC 5231 Query 156911 CGATGGCGCATATTAGA 156927 | |||||||| || || Sbjct 5230 CTGTGGCGCATGTTCGA 5214 >seq38620 Length=1898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 50348 CGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACT 50406 |||| ||| || |||| ||||||||| |||| |||| || ||| || | ||| Sbjct 257 CGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAACTGGATCTCAAGCAAGAAGGCCAACT 198 Query 50407 TTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTT 50466 |||| ||||| | || || || || || || ||| | ||||| |||||| ||| Sbjct 197 TTGGT-GAACGGGTTGTTGCCTTCGCTGCCGTGGAGGGTATCTTTTTCAGCGGTAGTTTT 139 Query 50467 GCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAG 50526 || ||||| || | |||| | ||| | ||||| || |||||||| |||||| Sbjct 138 GCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGATGCCAGGACTCACGTTCTCGAACGAG 79 Query 50527 TTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGT 50568 |||| ||||||||||||||| ||||| |||||||| ||| Sbjct 78 CTGATCTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTGT 37 >seq3519 Length=1813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| |||||||| || ||||| | || |||||||| || ||||||||||| | Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || || |||| ||||| || ||||| || || Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| || || Sbjct 1739 ATTCCTTCCTTATC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506690874111360