Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1636 183 4e-41 seq32102 159 5e-34 seq38620 122 1e-22 seq13717 91.5 2e-13 >seq1636 Length=7642 Score = 183 bits (202), Expect = 4e-41 Identities = 379/563 (67%), Gaps = 16/563 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 ||||| || | | ||| ||| | ||||| ||||| | |||||||| | | | || Sbjct 4527 ACAAATGGAATCTCCAATGGTTTGGTGCCGATGCTTCGCGTGTACAATAACACGGCGCGG 4586 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || |||||||| || || || || | || ||||| |||| || ||| Sbjct 4587 TACGTCGATCAAGGAGGCAATAAGCGACCCGGAGCATTTGCAATCTACCTGGAGCCGTGG 4646 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 |||| || || || || ||| |||| || || ||| | || || |||| ||| Sbjct 4647 CACGGTGATGTGTTCGAGTTTCTCGATCTGAAAAAGAACACAGGGAAGGAGGAGGTACGT 4706 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | ||| |||| ||||| || ||| | || ||||| ||||||||||| || Sbjct 4707 GCGCGAGACATGTTCTATGCCCTTTGGATACCGGATTTATTCATGAAGCGAGT------- 4759 Query 97047 GGTGGCTA-------CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 || ||||| ||||| || |||||||| | | ||||| |||| |||| Sbjct 4760 GGAGGCTAACGAAATGTGGAGTCTTATGTGCCCGCATGATTGCCCCGGATTGTCTGATTC 4819 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG 97159 |||||||||||||| ||| |||| || ||||||| | || || || | | | Sbjct 4820 GTGGGGCGAAGAGTTCGAGAAACGGTACGAGGGCTACGAGAAGGAAGGTCGCTTTATTCG 4879 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | ||| | || | || |||||| ||||| | | ||||| || || || Sbjct 4880 CCAAGTAAAGGCGCAGGACCTGTGGTTTGCCATAATTGAATCACAGGTGGAAACCGGCGT 4939 Query 97220 TCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCA 97278 |||||||| || ||||||||| |||| || || || |||||||| | || |||||| Sbjct 4940 GCCGTACATGCTGTACAAGGAT-GCGTGTAACCGAAAGAGCAACCAGCAAAACGTGGGCA 4998 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 | || ||| |||| || || |||||||| || || |||||| | || |||||||| | Sbjct 4999 CAATAAAGTGCTCAAACCTTTGCACGGAGATCGTGGAGTACTCTTCAAAGGACGAGATTG 5058 Query 97339 CAGTTTGCGTTCTGGCATCGGTC 97361 | || ||| ||| |||||| || Sbjct 5059 CCGTGTGCAATCTTGCATCGATC 5081 Score = 114 bits (126), Expect = 2e-20 Identities = 315/479 (66%), Gaps = 4/479 (1%) Strand=Plus/Plus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 || ||| | ||| ||||||||||||| |||||| | || | ||| | || ||||| | Sbjct 5517 AATTCTCTACTGTTGGCACCGATGCCGACGGCTTCAACCGCACAAATTTTGGGCAACAAT 5576 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || || || ||||||| ||| || ||| | || | || ||| || ||| ||||| ||| Sbjct 5577 GAGTCCTTCGAACCGTACACATCGAACGTTTATAATAGGCGCGTCCTGTCGGGAGAATTT 5636 Query 97905 CAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGC-TCAATCT-GTGGAACGATG 97962 ||| || || || | | |||||| |||| | || |||| |||||| Sbjct 5637 CAAGTGGTGAATCACCATCTCCTGAAGGACTTG--ACGGAGTGTGGCTTGTGGGACGATG 5694 Query 97963 ACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGG 98022 | ||| || || || |||| || || || || || ||||| || || Sbjct 5695 ATATGAGACACCGAATTCTGGCGCACAACGGATCGATCCAGAAAATTACGGAAATTCCCC 5754 Query 98023 AAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATA 98082 ||||| | || || ||||| || ||||||||||| | || || ||| | | Sbjct 5755 AAGAGATTCGTGACATTTACAAAACGGTCTGGGAGATATCAGTAAAAACTTCCATCAAGA 5814 Query 98083 TGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCG 98142 |||| |||||| |||| | | || || || || |||||||| | |||| || | Sbjct 5815 TGGCCGCCGACCGAGGAGCGTTTATAGATCAATCACAGTCGTTCAACATTCACGTGGCTG 5874 Query 98143 AGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGA 98202 | || | || | |||| ||||| || || |||| ||||| | |||||| || | Sbjct 5875 AACCGAATTATGGCAAGCTGACATCGATCCATTTCTACGGCTGGAAGATGGGCCTTAAAA 5934 Query 98203 CGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||||||||||||| || | || ||| |||| || ||||| | || ||||||||| Sbjct 5935 CGGGCATGTACTACTTGCGTACCAAGCCGGCGGTAAACGCCATTCAGTTCACGGTGGAC 5993 >seq32102 Length=1048 Score = 159 bits (176), Expect = 5e-34 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || ||||||| || ||||||||||| |||||| ||| ||||| |||||| Sbjct 494 CCGTCGAACCGTCCATGTTCCTGTACATGATGGCATTCATGCTGACGTCGGTCGTCGAGC 435 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||||| |||||||||||||||||||||||||||||| ||| | |||| Sbjct 434 AGGCGTTCTTCCTGTACAAAGCGTGCACCGTCAACCATGGCTACTCGCACGAGATTTGCC 375 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| ||||| | |||||||| || | || || ||| || || || | Sbjct 374 TCAACATCGAGCAGTATCAGGACATCAAAAAGCAGGTGCAAGTGACGACCTCAACCTTCC 315 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 ||||||||||| | |||| | ||||||||| | | |||| | ||||| ||| Sbjct 314 ATCAGTGGAACAACATCGCCATGTACGTGGTGCCCATCTTTCTGGCGCTCTTCCTCGGAG 255 Query 50037 CCT 50039 ||| Sbjct 254 CCT 252 >seq38620 Length=1898 Score = 122 bits (134), Expect = 1e-22 Identities = 195/279 (70%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| | || ||||| ||||| || |||||||| ||||| || |||||| || | || | Sbjct 649 AGGCTGAAGCATCCTTCTGGACCGTGGAAGAGGTGGATCTCTCGAAGGACATGAAGGACT 590 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 |||| ||||| ||| | ||||||| || | || |||||| | | || ||| Sbjct 589 GGGAA--TCGTT-----GAAGCCGAGCGAGCGTCACTTCATCTCGCACGTGCTCGCATTC 537 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| || ||||| ||||| ||||| || ||| || || ||| || ||| || Sbjct 536 TTTGCCGCTTCGGATGGCATCGTAAACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTG 477 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 || | || | ||||| ||||| ||||| || ||| || ||||| ||| Sbjct 476 CAGGTTACGGAAGCCCGCTGCTTCTACGGTTTCCAGGTCGCGATGGAAAACGTCCACAGT 417 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||||||||| ||||| || | ||| ||||||||| Sbjct 416 GAAATGTACTCACTGCTGATCGATACGTATATTCGCGAT 378 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| ||||| ||||| ||||| || ||||||||||||||||| || ||| Sbjct 183 GTTGCCTTCGCTGCCGTGGAGGGTATCTTTTTCAGCGGTAGTTTTGCGGCCATTTTCTGG 124 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || ||||||||||| | ||||| ||||| ||| | |||||| | || || || ||| Sbjct 123 CTTAAGAAGCGCGGCTTGATGCCAGGACTCACGTTCTCGAACGAGCTGATCTCGCGCGAC 64 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 || || || ||||| ||||||||| ||| |||| Sbjct 63 GAAGGACTGCACTGCGACTTTGCCTGTCTCATGTT 29 >seq13717 Length=2784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || ||||| || |||||||| || || | ||||| | || ||||| || || Sbjct 2704 TGGCCAGTCGAGTACATTATCTACACCGCGACCCTACCGAGCGTGCTGACCGGTGCGGAC 2645 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 | |||| || ||| | |||||||| ||||| |||| | |||| |||||| | || Sbjct 2644 ATTGCCATCTTTGCATCCTGCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGA 2585 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 ||| | || | || ||||||| ||| || ||||||||||| | ||||| || Sbjct 2584 ACGTTGCGCATTACGATACTGGATGCGACCTATCTCAGCACGATGCCGATAGGTGTCGCC 2525 Query 50315 ATCGGTAGTGTGCTGTGGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370 | || | |||| | | || | || ||| |||||| | |||||||| | ||||| Sbjct 2524 CTTGGGAATGTGATCTTTAA-CCATACCGGCAAGTCCTACACAATCATGTTCACCATCAA 2466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740586330124480