Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20012 159 8e-34 seq2949 145 2e-29 seq50967 127 5e-24 seq3519 111 4e-19 seq41025 105 2e-17 seq38620 86.0 1e-11 >seq20012 Length=3655 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||||||||||||||| | || | ||| || || || ||||| || Sbjct 2516 GTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATCCTCCAGCTGTTTGCCG 2575 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || |||||||||||||| |||||||| || Sbjct 2576 GCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGCCTTC 2635 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || ||||| || || || ||||| ||||| || ||| Sbjct 2636 ACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGTCTTCCCAGTGAGCGTT 2695 Query 104543 TTTACAAATATCTGCAT-TTTGTGT 104566 || || || |||||||| ||| ||| Sbjct 2696 TTGACGAAAATCTGCATCTTTCTGT 2720 >seq2949 Length=10021 Score = 145 bits (160), Expect = 2e-29 Identities = 232/328 (71%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620 |||| || | ||| |||| ||||| | | ||||| || || ||| |||| ||||||| Sbjct 9250 AGCTTGAAACGGCCAAAACACACGACGACTTGTGGAACTCGGCTCAGCTACAGATGGTAA 9191 Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680 |||||||||||| | ||| | |||||||| ||||| || || || || ||||||| Sbjct 9190 AGGAAGGCAAAATGCACGGCTTCCTGCGAATGTACTGGGCGAAGAAAATCCTCGAATGGA 9131 Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCG 238740 | | | | || | || || || || || ||||||||||| ||| |||| Sbjct 9130 CCAAAACGCCTGAAGAGGCGCTCGAATCAGCCATCTATCTGAACGACCGGTACAGTCTCG 9071 Query 238741 ACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT 238799 | || ||| ||||| ||||| ||||| || ||||||||||| || || | || ||| Sbjct 9070 ATGG-ACGCGATCCAAACGGGTACGTTGGCTGTATGTGGTCGATCGCGGGTATCCATGAT 9012 Query 238800 -AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAAC 238858 ||||| ||| ||| | |||||||||||| || |||||||||| || ||||| Sbjct 9011 CAGGGC-TGGAAAGAGCGCGATATATTTGGAAAGATTCGATACATGAACTACGAAGGCTG 8953 Query 238859 TAAGAAAAAATTTGATGTAAATGCTTTT 238886 || | |||||| |||| ||||| ||| Sbjct 8952 CAAAAGAAAATTCAATGTTAATGCGTTT 8925 >seq50967 Length=297 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || || || || | || | ||| ||||| || || ||||| Sbjct 110 GTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGCTTTCCG 169 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| || || |||||||||||||||||||||||||| || Sbjct 170 GCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATCCTGAATCTTTGCCTTG 229 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || ||||| || || || || || || || || ||| Sbjct 230 ACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTT 289 Query 104543 TTTACAAA 104550 || || || Sbjct 290 TTGACGAA 297 >seq3519 Length=1813 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || || || || | || | ||| ||||| || || ||||| Sbjct 1649 GTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGCTTTCCG 1708 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| || || |||||||| ||||||||||||||||| || Sbjct 1709 GCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCCTTATCCTGAATCTTTGCCTTG 1768 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || | |||||| || || ||||| || || || || Sbjct 1769 ACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGT 1812 >seq41025 Length=2165 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || || | ||||||||| || || |||||||| ||||||||||||||||| || || Sbjct 2 AAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACG 61 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || || | |||||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 62 TTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTTG 121 Query 104546 ACAAATATCTGCATTTTG 104563 || || || ||||| ||| Sbjct 122 ACGAAGATTTGCATGTTG 139 >seq38620 Length=1898 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTAC 269125 || |||| ||| || | || ||||||||||| ||||| || | | | || | Sbjct 255 TGCGTGAAAAAGAAGGCCGATTGGGCTCTGAACTGGATCTCAAGCAAGAAGGCCAACTTT 196 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC-TTTTGC 269184 || ||| || | ||||| || || || || || ||||| || ||| | ||| |||||| Sbjct 195 GGTGAACGGGTTGTTGCCTTCGCTGCCGTGGAGGGTATCTT-TTTCAGCGGTAGTTTTGC 137 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 || || || ||| | ||||| | ||| | ||||||||| | || ||||| ||||| | Sbjct 136 GGCCATTTTCTGGCTTAAGAAGCGCGGCTTGATGCCAGGACTCACGTTCTCGAACGAGCT 77 Query 269245 GATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 ||| | |||||||| | ||||||||||| || ||| Sbjct 76 GATCTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTGT 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150645324997984