Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq20890 113 4e-20 seq50967 91.5 1e-13 seq20012 87.8 2e-12 seq42053 86.0 5e-12 >seq20890 Length=2679 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| |||||||||||||||| || || ||||||| Sbjct 1427 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCCGTCCTC 1486 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | || ||||||||| Sbjct 1487 CAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTG 1546 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || || | | | | || ||||| | | || ||| | || ||||| || Sbjct 1547 GATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATGGTCTT 1606 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 ||| ||||| |||||||| || ||||||||| ||| Sbjct 1607 ACCCGTGAGGGTTTTCACGAAGATCTGCATCTTGT 1641 >seq50967 Length=297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | ||||| ||||| || || || || || ||||||||||| | | Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || ||||||||||| ||| || | || | |||||| ||||| ||| Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| || ||| ||| || ||||| | | || ||||||| | |||| | Sbjct 200 ATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACC 259 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 |||| || || ||||| ||||| |||||||| || || Sbjct 260 TCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq20012 Length=3655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | ||||| || ||||| ||||| || || |||| ||| || | ||| Sbjct 2501 AACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATCC 2560 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||||||| || ||| || | || | |||||||||||| || | || ||| || ||| Sbjct 2561 TCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCC 2620 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | ||||| || | | ||| ||||| |||||||| Sbjct 2621 TGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGTC 2680 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| ||||| || |||||||||||| Sbjct 2681 TTCCCAGTGAGCGTTTTGACGAAAATCTGCATC 2713 >seq42053 Length=1259 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || | || || ||||||| |||||||| || || | Sbjct 1200 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAA 1141 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||||||||| || | | |||||||||| || || || | | Sbjct 1140 GATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTCACATT 1081 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||| | || ||| ||| | || ||||| || || || ||||| ||||| Sbjct 1080 CTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 1021 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1020 GAAGATCTGCAT 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420989119619048